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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaactatagataaaaatttagtaatttgaatataggttcttctccgtctgagttttttttacttcttttgatgggcaaagaacatcgatcatttttttagcattggaatcagttatttaaattcatactgacattcctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATATATGCCCGCCTTGAGAAACTGGCTGCAAAACATGGCTGCACTCTTCCTC

Basic information

species Vitis vinifera
transcript Vv05s0020g04130.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04130.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G38900.1 (Glycine max), 3'ss of exon 5
gtcagtaactatagataaaaatttag-taatttgaatataggttcttctccgtctgagttttttttacttcttttgatg--ggcaaagaacatcg-atcatttttttagcattggaatcagttattta--aattcatactgacattcctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATATATGCCCGCCTTGAGAAACTGGCTGCAAAACATGGCTGCACTCTTCCTC
                   |||  || || | | ||  |       |  | |  |  | |  | | | |       ||   ||  |   | |||  |   ||  ||     |  | |   ||| | ||   | |  |  ||   || |||  ||||| ||||||||| |||||||| ||||| ||||| ||||||||||| ||| | |||   || |||||  |  ||||| | || |||| |||||||| | | |
-----------------gtaatgcagctagtgtcaacttgtagctcttccagattatgatggtctaaataacaccaatataggtcatacatatcacactgttagttctatttctgcagtggttgtctattgaattttcttgttgtttctgtgacagAGTATGCATCCCAGGTTCACGGGAGAAAATTTGGAGAAGAACAAGCTTTTCTATAAACGACTTGATGACTTGGCTTCTAAGCATGCCTGCACTCCTTCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33409014|gb|CF214641.1|CF214641
EST:     TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTG                         ACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
genomic: TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTGgtcagtaact ... cctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
EST: gi|30254580|gb|CB971325.1|CB971325
EST:     TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTG                         ACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
genomic: TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTGgtcagtaact ... cctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
EST: gi|33408926|gb|CF214553.1|CF214553
EST:     TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTG                         ACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
genomic: TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTGgtcagtaact ... cctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
EST: gi|110414170|gb|EC979996.1|EC979996
EST:     TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTG                         ACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
genomic: TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTGgtcagtaact ... cctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
EST: gi|32458980|gb|CD800154.1|CD800154
EST:     TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTG                         ACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
genomic: TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTGgtcagtaact ... cctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
EST: gi|30254582|gb|CB971327.1|CB971327
EST:     TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTG                         ACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
genomic: TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTGgtcagtaact ... cctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
EST: gi|46918219|gb|CN547548.1|CN547548
EST:     TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTG                         ACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
genomic: TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTGgtcagtaact ... cctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
EST: gi|33407206|gb|CF212833.1|CF212833
EST:     TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTG                         ACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
genomic: TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTGgtcagtaact ... cctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
EST: gi|33406858|gb|CF212485.1|CF212485
EST:     TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTG                         ACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
genomic: TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTGgtcagtaact ... cctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
EST: gi|33406944|gb|CF212571.1|CF212571
EST:     TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTG                         ACTATGCATCCAAGGTTCACTGGAGAGAATTT
genomic: TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTGgtcagtaact ... cctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTT
EST: gi|110373812|gb|EC938182.1|EC938182
EST:     TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTG                         ACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
genomic: TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTGgtcagtaact ... cctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
EST: gi|30254500|gb|CB971245.1|CB971245
EST:     TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTG                         ACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
genomic: TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTGgtcagtaact ... cctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
EST: gi|110374215|gb|EC938843.1|EC938843
EST:     TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTG                         ACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA
genomic: TCTTTGGTGGGAAGGCAGTTGTGGAGAGCTTGCCCACTCAGAGTATCCTGgtcagtaact ... cctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttttagcattggaatcagttatttaaattcatactgacattcctgccacagACTATGCATCCAAGGTTCACTGGAGAGAATTTAGAGAAGAACAAACTTATATATGCCCGCCTTGAGAAACTGGCTGCAAAACATGGCTGCACTCTTCCTC
                                   tactgac  putative branch site (score: 1)
                                           ttcctgcc  CT-rich tract
                aatcagttatttaaat  TA-rich tract