1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tgggtgtttctttagaatgccactgagggttttccacctatacaaaattcttgtattttattagtaaaagttttgataatattttctgtttgatttgcagCAAACTTTGTGCTATTGCCATTCAATTACCTTGTCAGTTCAGGTGGTGAAGGTCCAAGAAGTCCATTGGCAGACAGCAGTCTCCAAGTGTTACTTATTCT
species | Vitis vinifera |
transcript | Vv05s0020g04100.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCTGAAGGGAGTCAACCTGGTGTTCTACAGAGAGTTGGTTCAGCAGCTG CAAACTTTGTGCTATTGCCATTCAATTACCTTGTCAGTTCAGGTGGTGAAGEST: gi|352780977|gb|FQ466290.1|FQ466290
genomic: CTCTGAAGGGAGTCAACCTGGTGTTCTACAGAGAGTTGGTTCAGCAGCTGgtatggcagt ... tgatttgcagCAAACTTTGTGCTATTGCCATTCAATTACCTTGTCAGTTCAGGTGGTGAAG
EST: CTCTGAAGGGAGTCAACCTGGTGTTCTACAGAGAGTTGGTTCAGCAGCTG CAAACTTTGTGCTATTGCCATTCAATTACCTTGTCAGTTCAGGTGGTGAAG
genomic: CTCTGAAGGGAGTCAACCTGGTGTTCTACAGAGAGTTGGTTCAGCAGCTGgtatggcagt ... tgatttgcagCAAACTTTGTGCTATTGCCATTCAATTACCTTGTCAGTTCAGGTGGTGAAG
aattcttgtattttattagtaaaagttttgataatattttctgtttgatttgcagCAAACTTTGTGCTATTGCCATTCAATTACCTTGTCAGTTCAGGTGGTGAAGGTCCAAGAAGTCCATTGGCAGACAGCAGTCTCCAAGTGTTACTTATTCT
ttttctgttt CT-rich tract
tattttattagtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggtgtttctttagaatgccactgagggttttccacctatacaaaattcttgtattttattagtaaaagttttgataatattttctgtttgatttgcagCAAACTTTGTGCTATTGCCATTCAATTACCTTGTCAGTTCAGGTGGTGAAGGTCCAAGAAGTCCATTGGCAGACAGCAGTCTCCAAGTGTTACTTATTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
-gggtgtt
- - - - - - - gaatgcc
- - - - - - - - - - - - - - - - -ccaccta
- - - - - - - - - - - - - - - - - - - - -acaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtaaaa