1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcatgtctcaaacttcatgccattgttcagtgaaatataatgtattgctaacaggttcagttgtttagatctgtaatgttcagtgatttgcattctgcagGATTTATATTGGAACAAGATTTTATGGCATTGCTCAGACAATGACTCCTACCAGGGCTGTGCTCTTCCTGAGAGGCAGGATTTTGTTGACAAGGAACCTG
species | Vitis vinifera |
transcript | Vv05s0020g03760.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGCTAAATCGTTGCTTATTATTATTGGAAATCCACACATTATCAGCAAG GATTTATATTGGAACAAGATTTTATGGCATTGCTCAGAACA-TGACTCCCTEST: gi|71871152|gb|DT020207.1|DT020207
genomic: GAGCTAAATCGTTGCTTATTATTATTGGAAATCCACACATTATCAGCAAGgtatctctca ... cattctgcagGATTTATATTGGAACAAGATTTTATGGCATTGCTCAGA-CAATGACTCC-T
EST: GAGCTAAATCGTTGCTTATTATTATTGGAAATCCACACATTATCAGCAAG GATTTATATTGGAACAAGATTTTATGGCATTGCTCAGACAATGACTCCTAC
genomic: GAGCTAAATCGTTGCTTATTATTATTGGAAATCCACACATTATCAGCAAGgtatctctca ... cattctgcagGATTTATATTGGAACAAGATTTTATGGCATTGCTCAGACAATGACTCCTAC
tgctaacaggttcagttgtttagatctgtaatgttcagtgatttgcattctgcagGATTTATATTGGAACAAGATTTTATGGCATTGCTCAGACAATGACTCCTACCAGGGCTGTGCTCTTCCTGAGAGGCAGGATTTTGTTGACAAGGAACCTG
tgctaac putative branch site (score: 1)
ttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgtctcaaacttcatgccattgttcagtgaaatataatgtattgctaacaggttcagttgtttagatctgtaatgttcagtgatttgcattctgcagGATTTATATTGGAACAAGATTTTATGGCATTGCTCAGACAATGACTCCTACCAGGGCTGTGCTCTTCCTGAGAGGCAGGATTTTGTTGACAAGGAACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
tcatgtc
- - - -tcaaact
- - - - - - - tcatgcc
- - - - - - - - - - - - - - - - aaatata
- - - - - - - - - - - - - - - - - - - - - - -tgctaac