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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggaacccctcagtttctctttcccatatctaactctgtctctacgattccccatttacatatgtttcctttgtcatgcagGGTAAAAAACCAGATGCCCTTTACAAAGTGAAGGATCCTGAGGTGCGGCAATTTGTCGAAAAATGCTTAGCCACGGTGACTCTTAGGCTTTCTGCCAGGG

Basic information

species Vitis vinifera
transcript Vv05s0020g03380.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G30210.1 (Glycine max), 3'ss of exon 5
gtaggaac-ccctcagtttctctttcccatatctaactc-tgtctctacgattccccatttacatatgtttcctttgtcatgcagGGTAAAAAACCAGATGCCCTTTACAAAGTGAAGGATCCTGAGGTGCGGCAATTTGTCGAAAAATGCTTAGCCACGGTGACTCTTAGGCTTTCTGCCAGGG
||| |      | |  | ||| | ||   |   |||    |   ||   | |     | || |||  |  |  | |||| | ||||| ||||| ||||||||  | || | |||||||||||| || |||||||||||||| || |||||||| ||||| ||| |||| ||||||||||| ||||
gtaagtttgttccctttctctatgtcttgttgataagggattgttcggtggtggtgaaatttcattggcattttctgtc-tccagGGGAAAAAGCCAGATGCTTTGTATAGAGTGAAGGATCCAGAAGTGCGGCAATTTGTTGAGAAATGCTTGGCCACAGTGTCTCTAAGGCTTTCTGCAAGGG

upper sequence: Vv05s0020g03380.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G37180.1 (Glycine max), 3'ss of exon 5
gtaggaac-ccctcagtttctctttcccatatctaactc-tgtctctacgattccccatttacatatgtttcctttgtcatgcagGGTAAAAAACCAGATGCCCTTTACAAAGTGAAGGATCCTGAGGTGCGGCAATTTGTCGAAAAATGCTTAGCCACGGTGACTCTTAGGCTTTCTGCCAGGG
||| |      | |  | ||| | ||   |   |||    | | |||  | |     | || |||  || |  |||||| | ||||| ||||| ||||||||  | || | |||||||||||| || ||||| |||||||| ||||||||||| | ||| ||| |||| ||||||||||| || |
gtaagtttgttccctttctctatgtcttgttgataagggatttttctgtggtggtggaatttcattggtgttttttgtc-tccagGGGAAAAAGCCAGATGCTTTGTATAGAGTGAAGGATCCAGAAGTGCGACAATTTGTTGAAAAATGCTTGGTCACAGTGTCTCTAAGGCTTTCTGCAAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatctaactctgtctctacgattccccatttacatatgtttcctttgtcatgcagGGTAAAAAACCAGATGCCCTTTACAAAGTGAAGGATCCTGAGGTGCGGCAATTTGTCGAAAAATGCTTAGCCACGGTGACTCTTAGGCTTTCTGCCAGGG
 atctaac  putative branch site (score: 2)
                                      tttcctttgtc  putative PPT
                           atttacatatgttt  TA-rich tract