Sequence
atgc intronic sequence ATGC exonic sequence...gttagcttgttactgtatggagtaacttcgttagctaaaatgcctcttctgcagtattttctctgaaggagttgattttttattattactgtttggatagGTGGATTTCATGTTCAATGCTTCAAAACAAGTTGGTTCTCTTCGAAAGCTTTTAACATCATACTCTTCAACCAATAACCGTCAGACTGTTTTTGCCAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g02870.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G38810.2 (Glycine max), 3'ss of exon 5
---gttagcttgttactgtatggagtaacttcgttagctaaaatgcctcttctgcagtattttctctgaaggagttgattttttattattactgtttggatagGTGGATTTCATGTTCAATGCTTCAAAACAAGTTGGTTCTCTTCGAAAGCTTTTAACATCATACTCTTCAACCAATAACCGTCAGACTGTTTTTGCCAGTG
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ggaattatataagccctgccagcttctatttttctttttgcccctcagcaacttcataaatatttatttcttattt--ttttttat-attattatctgtttagGTTGACTGCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTTTGACTTCATATTCATCTTGCAATAACCGTCAGACAGTCTTTGCCAGTG
upper sequence: Vv05s0020g02870.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G19210.2 (Arabidopsis thaliana), 3'ss of exon 5
-------------------------------gttagcttgttactgtatgga-------gtaacttcgttagcta--aaatgcctcttctgcagtattttctctgaaggagttgattttttattattactgtttggatagGTGGATTTCATGTTCAATGCTTCAAAACAAGTTGGTTCTCTTCGAAAGCTTTTAACATCATACTCTTCAACCAATAACCGTCAGACTGTTTTTGCCAGTG
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gtaaaaactttctcaactatgtattgtacttttcagcttattctccttgggaaatgattgaggctgttctggatattgaacatcattctcggaacattttctcacccaggaatatatttgaatggtcacttt---gatagGTTGATTTCTTATTCTACTCATCAAAGCAAGTTGGTTCTGTGCGGAAGCTTTTGACATCATTTTCTTCATGCGATAAACGTCAGACAGTTTTTGCAAGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110374029|gb|EC938511.1|EC938511EST: AGAAGCAAATTTTCAAGCTAGAATCAATGAGGGTGCTGGTAATTGATGAG GTGGATTTCATGTTCAATTCTTCAAAACAAGTTGGTTCTCTTCGAAAGCTT
genomic: AGAAGCAAATTTTCAAGCTAGAATCAATGAGGGTGCTGGTAATTGATGAGgtaattgatc ... gtttggatagGTGGATTTCATGTTCAATGCTTCAAAACAAGTTGGTTCTCTTCGAAAGCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttctgcagtattttctctgaaggagttgattttttattattactgtttggatagGTGGATTTCATGTTCAATGCTTCAAAACAAGTTGGTTCTCTTCGAAAGCTTTTAACATCATACTCTTCAACCAATAACCGTCAGACTGTTTTTGCCAGTG
agttgat putative branch site (score: 5)
ttgattttttattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagcttgttactgtatggagtaacttcgttagctaaaatgcctcttctgcagtattttctctgaaggagttgattttttattattactgtttggatagGTGGATTTCATGTTCAATGCTTCAAAACAAGTTGGTTCTCTTCGAAAGCTTTTAACATCATACTCTTCAACCAATAACCGTCAGACTGTTTTTGCCAGTG
- tagcttg
- - - - - - -tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgaa