Sequence
atgc intronic sequence ATGC exonic sequencegtctgtttcctatgataaactggttttactattcactttggttccattgcatgtcactgtgtctatgcgatagttcgctttgtttgctcaactattggtcttatgaggtcagGTACGCAATGAGAAGGCTCGGAGATATTTAAGCAGCATGCGGAAGAAAAAGCCCATTCCCTTGTCCCAGAAATTCCCAAATGCAGATCCCCTTGCACTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G28120.1 (Glycine max), 3'ss of exon 5
gtctgtttcctatgataaactggttttactattcactttggttccattgcatgtcactgtgtctatgcgatagttcgctttgtttgctcaactattggtcttatgaggtcagGTACGCAATGAGAAGGCTCGGAGATATTTAAGCAGCATGCGGAAGAAAAAGCCCATTCCCTTGTCCCAGAAATTCCCAAATGCAGATCCCCTTGCACTCC
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-----------------------gtctgttgttcagtttcccttccttttg-gcaattttgtttgttctat--tttg--ttactcaatgcaaccttggtattacactaaaagGTACGAAATGAGAAAGCTCGGAGATATTTGAGCAGCATGCGAAAGAAGAAGCCTGTTCCTCTCTCGCAGAAGTTTCCTAATGCAGACCCCCTTGCTCTTC
upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G10940.4 (Glycine max), 3'ss of exon 5
gtctgtttcctatgataaactggttttactattcactttggttccattgcatgtcactgtgtctatgcgatagttcgctttgtttgctcaactattggtcttatgaggtcagGTACGCAATGAGAAGGCTCGGAGATATTTAAGCAGCATGCGGAAGAAAAAGCCCATTCCCTTGTCCCAGAAATTCCCAAATGCAGATCCCCTTGCACTCC
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-----------------------gtctgttgttcagtttcccttcctttta-gcaattttgtttgttctat--tttg--ttacttaatgaaaccttggtat-atactaatagGTACGAAATGAGAAAGCTCGGAGATATTTGAGCAGCATGCGAAAGAAGAAGCCAGTTCCTTTCTCGCAGAAGTTTCCTCATGCAGACCCCCGTGCTCTTC
upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G02220.1 (Glycine max), 3'ss of exon 5
gtctgtttcctatgataaactggttttactattcactttggttccattgcatgtcactgtgtctatgcgatagttcgctttgtttgctcaactattggtcttatgaggtcagGTACGCAATGAGAAGGCTCGGAGATATTTAAGCAGCATGCGGAAGAAAAAGCCCATTCCCTTGTCCCAGAAATTCCCAAATGCAGATCCCCTTGCACTCC
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-----------------------gtctgttgttcatttg----ccaatcc-tgctagcaaatttgtgtcctttattttgttacttaatataaccttgggagtatattaacagGTACGGAATGAGAAAGCTCGGAGATACTTGAGTAGCATGCGTAAGAAGAAGCCAGTTCCTTTCTCCCAAAAGTTTCCTAATGTAGACCCCCTTGCTCTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtgtctatgcgatagttcgctttgtttgctcaactattggtcttatgaggtcagGTACGCAATGAGAAGGCTCGGAGATATTTAAGCAGCATGCGGAAGAAAAAGCCCATTCCCTTGTCCCAGAAATTCCCAAATGCAGATCCCCTTGCACTCC
tttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctgtttcctatgataaactggttttactattcactttggttccattgcatgtcactgtgtctatgcgatagttcgctttgtttgctcaactattggtcttatgaggtcagGTACGCAATGAGAAGGCTCGGAGATATTTAAGCAGCATGCGGAAGAAAAAGCCCATTCCCTTGTCCCAGAAATTCCCAAATGCAGATCCCCTTGCACTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT