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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggcagttgtttatatgtttgtagtaccatttataaatttaacagtcttttataagctaaaacatctgcatttagcagtaacatttcttttttctttaattgcagGTACTGCATTCTGGAATTCCACTCACCCTTGTTCCCCTGGATGCAACAAACACCATCCCCATAGACGAGGAATTTTTTGATGCATTTGATCAGAACCAGA

Basic information

species Vitis vinifera
transcript Vv05s0020g02200.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02200.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G02440.1 (Glycine max), 3'ss of exon 4
gtagggcagttgtttatatgtttgtagtaccatttataaatttaacagtcttttataagctaaaacatctgcatttagcagtaacatttcttttttctttaattgcagGTACTGCATTCTGGAATTCCACTCACCCTTGTTCCCCTGGATGCAACAAACACCATCCCCATAGACGAGGAATTTTTTGATGCATTTGATCAGAACCAGA
 |     | || ||||| | ||| ||     ||| | | |         |||  || ||  |||| |  |   || | ||  || | |   | | || | | || |||||  | ||||||||||||||  ||||||||||||| || |||||||||||||| ||||||||  ||||  |||| ||||||||||||||  |||  ||  
attataaaatt-tttatttatttttaagtttattcaaatac------accttgaatcagacaaaaaaa-tatgttcatcacaaaaaataaatatatcctgattttcagGTGATCCATTCTGGAATTCCTATCACCCTTGTTCCTCTTGATGCAACAAACACAATCCCCATCAACGAACAATTCTTTGATGCATTTGAAAAGAGTCAAG

upper sequence: Vv05s0020g02200.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G28400.2 (Glycine max), 3'ss of exon 5
--gtagggcagttgtttatatgtttgtagtaccatttataaatttaacagtcttttataagctaaaacatctgcatttagcagtaacatttcttttttctttaattgcagGTACTGCATTCTGGAATTCCACTCACCCTTGTTCCCCTGGATGCAACAAACACCATCCCCATAGACGAGGAATTTTTTGATGCATTTGATCAGAACCAGA
        || |  |||  | |||   | |  ||| | || ||  ||   |     || |   |    ||  |   ||  |   ||  |   | |  | ||       ||||  | |||||||| || ||  | ||||||||||| || |||||||||||||| ||||||||  | || ||||| ||| ||| ||||||  | |  ||  
taagcattcaatcttttcaaggttcagattgacatgtttacatgcaaagataa---atgaaagatgtgattggttcttgaccaaaaagtacatgtcatttt-------agGTGATTCATTCTGGTATACCTGTTACCCTTGTTCCTCTTGATGCAACAAACACAATCCCCATCAATGAAGAATTCTTTAATGAATTTGAAAAAAGTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161710706|gb|FC060284.1|FC060284
EST:     GGAGACCCGTTTGCTGCATACCTG                         GTACTGCATTCTGGAATTCCACTCACCCTTGTTCCCCTGGATGCAACAAAC
genomic: GGAGACCCGTTTGCTGCATACCTGgtagggcagt ... ttaattgcagGTACTGCATTCTGGAATTCCACTCACCCTTGTTCCCCTGGATGCAACAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataagctaaaacatctgcatttagcagtaacatttcttttttctttaattgcagGTACTGCATTCTGGAATTCCACTCACCCTTGTTCCCCTGGATGCAACAAACACCATCCCCATAGACGAGGAATTTTTTGATGCATTTGATCAGAACCAGA
                                 tttcttttttctttaa  CT-rich tract
                            taacatttcttttttc  TA-rich tract