1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgacgtttcatgaatatgcatgtacatatatttgtgttctacttattttgcatcttttcctccctctctaatttaatggagacaaacctcatgactgtagATTGAGAGCTGCTGGCAAAGCTAATGTAGATGGAGTGAAGAAAACTCGTACACGTGATCGAGCTGTAAGGGCAATGCCTGCTCCAGAAGCCAATGCTGAG
species | Vitis vinifera |
transcript | Vv05s0020g01890.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTCCCAGCAAGGAGATGGATGCTAAATTACGGGATGAAGAAGCCAGAAG ATTGAGAGCTGCTGGCAAAGCTAATGTAGATGGAGTGAAGAAA-CTCGTACEST: gi|110726282|gb|EE101925.1|EE101925
genomic: CCTCCCAGCAAGGAGATGGATGCTAAATTACGGGATGAAGAAGCCAGAAGgtgtgtggac ... atgactgtagATTGAGAGCTGCTGGCAAAGCTAATGTAGATGGAGTGAAGAAAACTCGTAC
EST: CCTCCCAGCAAGGAGATGGATGCTAAATTACGGGATGAAGAAGCCAGAAG ATTGAGAGCTGCTGGCAAAGCTAATGTAGATGGAGTGAAGAAAACTCGTACEST: gi|34544526|gb|CF512758.1|CF512758
genomic: CCTCCCAGCAAGGAGATGGATGCTAAATTACGGGATGAAGAAGCCAGAAGgtgtgtggac ... atgactgtagATTGAGAGCTGCTGGCAAAGCTAATGTAGATGGAGTGAAGAAAACTCGTAC
EST: CTCCCAGCAAGGAGATGGATGCTAAATTACGGGGATGAAGAAGCCAGAAG ATTGAGAGCTGCTGGCAAAGCTAAATGTAGATGGAGTGAAGAAAACTCGTAEST: gi|77586479|gb|DV222360.1|DV222360
genomic: CTCCCAGCAAGGAGATGGATGCTAAATTACGGG-ATGAAGAAGCCAGAAGgtgtgtggac ... atgactgtagATTGAGAGCTGCTGGCAAAGCTAA-TGTAGATGGAGTGAAGAAAACTCGTA
EST: CCTCCCAGCAAGGAGATGGATGCTAAATTACGGGATGAAGAAGCCAGAAG ATTGAGAGCTGCTGGCAAAGCTAATGTAGATGGAGTGAAGAAAACTCGTAC
genomic: CCTCCCAGCAAGGAGATGGATGCTAAATTACGGGATGAAGAAGCCAGAAGgtgtgtggac ... atgactgtagATTGAGAGCTGCTGGCAAAGCTAATGTAGATGGAGTGAAGAAAACTCGTAC
ttttgcatcttttcctccctctctaatttaatggagacaaacctcatgactgtagATTGAGAGCTGCTGGCAAAGCTAATGTAGATGGAGTGAAGAAAACTCGTACACGTGATCGAGCTGTAAGGGCAATGCCTGCTCCAGAAGCCAATGCTGAG
tctaatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacgtttcatgaatatgcatgtacatatatttgtgttctacttattttgcatcttttcctccctctctaatttaatggagacaaacctcatgactgtagATTGAGAGCTGCTGGCAAAGCTAATGTAGATGGAGTGAAGAAAACTCGTACACGTGATCGAGCTGTAAGGGCAATGCCTGCTCCAGAAGCCAATGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - catgaat
- - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaacc