Sequence
atgc intronic sequence ATGC exonic sequencegttgtgagatttacatctatatttgtaagagagatttcagggattcatggaggaaatcagtatcatattcttagtaaccttaactattggcacaaagcagatagAGGTGCACATGTTTATTGGTTGAAGAAAGGGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G28660.1 (Glycine max), 3'ss of exon 5
---------gttgtgagatttacatctatatttgtaagagagatttcagggattcatgg-aggaaatcagtatcatattcttagtaaccttaactattggcacaaagcagatagAGGTGCACATGTTTATTGGTTGAAGAAAGGGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAG
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gtttactaggattccaactgttcattcatcttggtggttatttctattatcatatttgtcagtttatgtctattgtctgcttc-caaccttgacattttaaacaaagtagATAAAGGTGCACATGCTTATTGGTTAGATAAGGGGATTGTCGAATCTCGTCCTGATCACATCCTGAATCTTATACACTATGAG
upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G10460.1 (Glycine max), 3'ss of exon 4
--------------------gttgtgagatttacatctat--atttgtaagagag---atttcagggatt-catggaggaaatca-gtatcatat-tcttagtaaccttaactattggcacaaagcagatagAGGTGCACATGTTTATTGGTTGAAGAAAGGGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAG
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atatccttttcaaaattcagtttactaggattccaactattcattcatctgggtggttatttctattattatgtttatcagtttatgtctagtgtctgcttccaaccttgacattttaaacAAAGTAGATAAAGGTGCACATGCTTATTGGTTAGAGAAGGGGATAGTCGAATCTCGTCCTGATCACATTCTGAATCTTATACACTATGAG
upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G10460.4 (Glycine max), 3'ss of exon 4
--------------------gttgtgagatttacatctat--atttgtaagagag---atttcagggatt-catggaggaaatca-gtatcatat-tcttagtaaccttaactattggcacaaagcagatagAGGTGCACATGTTTATTGGTTGAAGAAAGGGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAG----------
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atatccttttcaaaattcagtttactaggattccaactattcattcatctgggtggttatttctattattatgtttatcagtttatgtctagtgtctgcttccaaccttgacattttaaacAAAGTAGATAAAGGTGCACATGCTTATTGGTTAGAGAAGGGGATAGTCGAATCTCGTCCTGATCACATTCTGAATCTTATACACTATGAGGTCAGAATTT
upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G26450.1 (Glycine max), 3'ss of exon 4
------gttgtgagattta---catctatatttgtaagagagatttcag--ggattcatggaggaaatcagtatcatattct-tagtaaccttaactattggcacaaagcagatagAGGTGCACATGTTTATTGGTTGAAGAAAGGGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAG
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atatccttggttggattcaaattattaggatcaccaaaaattgttttaacctgagtgatcattgccactatgcttttatttaatagcaaccttgaccaattttacAAAGCAGATAGAGGTGCACACAATTATTTCTTGGAAAAGGGTGTTGTTGATAGTCGTCCTGATCACATCCTGAATCTTATACATTATGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaggaaatcagtatcatattcttagtaaccttaactattggcacaaagcagatagAGGTGCACATGTTTATTGGTTGAAGAAAGGGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAG
tatcatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgtgagatttacatctatatttgtaagagagatttcagggattcatggaggaaatcagtatcatattcttagtaaccttaactattggcacaaagcagatagAGGTGCACATGTTTATTGGTTGAAGAAAGGGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC