Sequence
atgc intronic sequence ATGC exonic sequencegtaaagtcattgtacccttccctttttttcctttgtgatggccattacttttgctttattgcacattgatctctcatatttgattttgttaataacatcagATATTTGTCCCCATCCATCAAGAGATACATTGGTGCTTAGCGGTTATCAATAAACAGGATAAGAAGTTCCAGTATCTTGATTCACTCAAAGGAATGGATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01220.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G15890.1 (Glycine max), 3'ss of exon 6
gtaaagtcattgtacccttccctttttttcctttgtgatggccattacttttg-ctttattgcacattgatctctcatatttgattttgttaataacatcagATATTTGTCCCCATCCATCAAGAGATACATTGGTGCTTAGCGGTTATCAATAAACAGGATAAGAAGTTCCAGTATCTTGATTCACTCAAAGGAATGGATA
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gtaattatgttggaaccaatttttcattttacttctaa---ccatgtcaattgattttcatactgatcgatctttcac--ctgattt-attgttattaccagATATTTGTACCTATCCATCAAGAGATACATTGGTGCTTGGCAGTTATCAATAAGAAAGATAAGAAATTCCAGTATCTTGACTCAATGAAAGGAGAGGATA
upper sequence: Vv05s0020g01220.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G04970.1 (Glycine max), 3'ss of exon 4
gtaaagtcattgtacccttccc--tttttttcctttgtgatggccattacttttgctttattgcacattgatctctcatatttgattttgttaataacatcagATATTTGTCCCCATCCATCAAGAGATACATTGGTGCTTAGCGGTTATCAATAAACAGGATAAGAAGTTCCAGTATCTTGATTCACTCAAAGGAATGGATA
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-----gtaattatgtttgaactaatttttcatgttacttctagccatgtcaattggtttc---catactgatctttcac---cggatttaatgttattaccagATATTTGTACCTATCCATCAAGAGATACATTGGTGCTTGGCAGTTATCAATAAGAAAGATAAGAAATTCCAGTATCTTGACTCAATGAAAGGAGAGGATA
upper sequence: Vv05s0020g01220.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G37640.4 (Glycine max), 3'ss of exon 5
gtaaagtcatt--gtacccttccctttttttcctttgtgatggccattacttttgctttattgcacattgatctctcatatttgattttgttaataacatcagATATTTGTCCCCATCCATCAAGAGATACATTGGTGCTTAGCGGTTATCAATAAACAGGATAAGAAGTTCCAGTATCTTGATTCACTCAAAGGAATGGATA
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gtaatcatgtttaaaaaattatcaattcttacttttcttataaccaatcaaattggttttt---atgctgatcttttacattt---tttgttc------ccagATATTTGTTCCTATCCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAATAAGAAAGATAAGAAATTTCAGTATCTGGACTCACTAAGAGGAACAGATG
upper sequence: Vv05s0020g01220.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G03010.2 (Glycine max), 3'ss of exon 5
gtaaagtcattgtacc--cttccctttttttcctttgtgatggccattacttttgctttattgcacattgatctctcatatttgattttgttaataacatcagATATTTGTCCCCATCCATCAAGAGATACATTGGTGCTTAGCGGTTATCAATAAACAGGATAAGAAGTTCCAGTATCTTGATTCACTCAAAGGAATGGATA
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gtaattatgttgaaaaaattatcaagttttgcttttcttataaccaatcaaattatcaaattggttttta--tgctgatattttacattgtttgttcc--tagATATTTGTACCTATTCATAAAGAGATTCATTGGTGCTTGGCTGTTATCAATAAGAAAGATAAGAAATTTCAGTATCTGGACTCACTGAGAGGAACAGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351032678|gb|FQ462392.1|FQ462392EST: GATGGACTACCCAAAGGAAGTTGGGATACAGCCTTAGTGAATGTGACAAA ATATTTGTCCCCATCCATCAAGAGATACATTGGTGCTTAGCGGTTATCAAT
genomic: GATGGACTACGCAAAGGAAGTTGGGATACAGCCTTAGTGAATGTGACAAAgtaaagtcat ... ataacatcagATATTTGTCCCCATCCATCAAGAGATACATTGGTGCTTAGCGGTTATCAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttttgctttattgcacattgatctctcatatttgattttgttaataacatcagATATTTGTCCCCATCCATCAAGAGATACATTGGTGCTTAGCGGTTATCAATAAACAGGATAAGAAGTTCCAGTATCTTGATTCACTCAAAGGAATGGATA
taataac putative branch site (score: 1)
atatttgattttgtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaagtcattgtacccttccctttttttcctttgtgatggccattacttttgctttattgcacattgatctctcatatttgattttgttaataacatcagATATTTGTCCCCATCCATCAAGAGATACATTGGTGCTTAGCGGTTATCAATAAACAGGATAAGAAGTTCCAGTATCTTGATTCACTCAAAGGAATGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA