Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaattttggactgaacatatttcatagagggattccccagggttcttgttacatgccagattcttcgtagttgtttcttttgataaatgcacttttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGATTCCAGAAACTAGGAATTCGGCCACCCAAGGGAGTGCTTTTGTATGGGC

Basic information

species Vitis vinifera
transcript Vv05s0020g01180.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 3'ss of exon 4
-------------------------------------------------------------------------gtgaattttggactga---acat-atttcatagagggattccccagggttcttgttacatgccagattcttcgtagttgtttcttttgataaatgcacttttgtaa---cagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGATTCCAGAAACTAGGAATTCGGCCACCCAAGGGAGTGCTTTTGTATGGGC
                                                                         | ||||  | ||   |     ||   |||||  |   |          ||    |  |||       | ||| || ||  |  || |    |    | |||  | |    |||| || || || || |||||||||||| |||| ||||| |||||||| || ||||| ||  | || ||||| || ||||| ||||| ||||||||||| |
gtacattgcttaataaatgttgaaagttcagtgttcctttttggaactggaaatattgacaaccatctctttagggaataatagagcaatttgtatcgcttcatgcatcaagcatgttacatttccatc-catcttttccttttcataatttatcattctttccatcctattttattgaatatagATTCAAGAGCTTGTGGAGGCAATTGTTTTGCCAATGACACACAAAGATCGGTTCCAAAAGTTGGGCATTCGCCCCCCCAAAGGAGTTCTTTTGTATGGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349808820|gb|FQ406670.1|FQ406670
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349812353|gb|FQ406374.1|FQ406374
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349808282|gb|FQ403469.1|FQ403469
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGTGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349833057|gb|FQ416435.1|FQ416435
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351026753|gb|FQ436406.1|FQ436406
EST:     ATGAAGAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349812105|gb|FQ410902.1|FQ410902
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCCTGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351026800|gb|FQ436453.1|FQ436453
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349811569|gb|FQ409565.1|FQ409565
EST:     ATGAAAAGCCAACTGAAGATTACAATGACACTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACT
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACT
EST: gi|349828325|gb|FQ416278.1|FQ416278
EST:     ATGATAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349818668|gb|FQ403502.1|FQ403502
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|110717892|gb|EE094156.1|EE094156
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349815538|gb|FQ400694.1|FQ400694
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349818769|gb|FQ409303.1|FQ409303
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGAACTCATAA-GAGCG
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGA-CTCACAAAGAGCG
EST: gi|349814178|gb|FQ414797.1|FQ414797
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAT                         ATCCGGGAACTCGTTGAGAGCA-TTGTT
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAG-GCAATTGTT
EST: gi|349809052|gb|FQ407501.1|FQ407501
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCCACAA-GAGCA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTC-ACAAAGAGCG
EST: gi|349810100|gb|FQ401546.1|FQ401546
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351026518|gb|FQ428530.1|FQ428530
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351037334|gb|FQ460533.1|FQ460533
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351019753|gb|FQ439570.1|FQ439570
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349815049|gb|FQ410272.1|FQ410272
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCCGCCCATGACTCAAAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349814278|gb|FQ398704.1|FQ398704
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351012252|gb|FQ426974.1|FQ426974
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGA-A-GCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351019480|gb|FQ429615.1|FQ429615
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349807880|gb|FQ402271.1|FQ402271
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351033839|gb|FQ447877.1|FQ447877
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349809200|gb|FQ398973.1|FQ398973
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349811159|gb|FQ406103.1|FQ406103
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349822547|gb|FQ412822.1|FQ412822
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351043388|gb|FQ451440.1|FQ451440
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351024771|gb|FQ430596.1|FQ430596
EST:     ATGAAAAGCCAACTGACGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349819018|gb|FQ411713.1|FQ411713
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351023074|gb|FQ430949.1|FQ430949
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349818376|gb|FQ409151.1|FQ409151
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351047310|gb|FQ451822.1|FQ451822
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349820629|gb|FQ408458.1|FQ408458
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351023695|gb|FQ448246.1|FQ448246
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349818006|gb|FQ407995.1|FQ407995
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351012427|gb|FQ427028.1|FQ427028
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGA-A-GCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349814949|gb|FQ410172.1|FQ410172
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349809023|gb|FQ407472.1|FQ407472
EST:     ATGAAAAACCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAACAC                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACCTC-CAAAAAGCG
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGAC-TCACAAAGAGCG
EST: gi|349817520|gb|FQ407310.1|FQ407310
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|110699646|gb|EE076827.1|EE076827
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351037562|gb|FQ462545.1|FQ462545
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351041131|gb|FQ444108.1|FQ444108
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349816463|gb|FQ403838.1|FQ403838
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351027526|gb|FQ446689.1|FQ446689
EST:     ATGATAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349817057|gb|FQ399804.1|FQ399804
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351040135|gb|FQ425221.1|FQ425221
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349814705|gb|FQ409928.1|FQ409928
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349815856|gb|FQ401012.1|FQ401012
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351054548|gb|FQ452024.1|FQ452024
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349816484|gb|FQ403859.1|FQ403859
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|352798843|gb|FQ478478.1|FQ478478
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349822553|gb|FQ412828.1|FQ412828
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349833224|gb|FQ416602.1|FQ416602
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacatgccagattcttcgtagttgtttcttttgataaatgcacttttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGATTCCAGAAACTAGGAATTCGGCCACCCAAGGGAGTGCTTTTGTATGGGC
                             ttttgat  putative branch site (score: 4)
                                         cactttt  putative PPT
                         tttcttttgataaat  TA-rich tract