1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taccactgaataatgatttatactgtattaatatagacccattaaagaaaaaggaaatattcaggttcttgttgaattagtaatcaggtgccatgtacagGTTCTTGTTGACTGCAGTGGAGATGATGGGACAGAAAAAACTCCTGAATCGGCCTTTCTCAATAAGAAATCTGCTCTTTTGCAGCTTGTGGAGGGAAGTC
species | Vitis vinifera |
transcript | Vv05s0020g01130.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGTGATCATGGGACCTGGTATGCACCGAATAAGCTCCAGACTTGAGGAG GTTCTTGTTGACTGCAGTGGAGATGACGGGACAGAAAAAACTCCTGAATCGEST: gi|22007988|gb|BQ793022.1|BQ793022
genomic: AAGTGATCATGGGACCTGGTATGCACCGAATAAGCTCCAGACTTGAGGAGgttagttctt ... ccatgtacagGTTCTTGTTGACTGCAGTGGAGATGATGGGACAGAAAAAACTCCTGAATCG
EST: AAGTGATCATGGGACCTGGTATGCACCGAATAAGCTCCAGACTTGAGGAG GTTCTTGTTGACTGCAGTGGAGATGATGGGACAGAAAAAACTCCTGAATCG
genomic: AAGTGATCATGGGACCTGGTATGCACCGAATAAGCTCCAGACTTGAGGAGgttagttctt ... ccatgtacagGTTCTTGTTGACTGCAGTGGAGATGATGGGACAGAAAAAACTCCTGAATCG
agaaaaaggaaatattcaggttcttgttgaattagtaatcaggtgccatgtacagGTTCTTGTTGACTGCAGTGGAGATGATGGGACAGAAAAAACTCCTGAATCGGCCTTTCTCAATAAGAAATCTGCTCTTTTGCAGCTTGTGGAGGGAAGTC
aattagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccactgaataatgatttatactgtattaatatagacccattaaagaaaaaggaaatattcaggttcttgttgaattagtaatcaggtgccatgtacagGTTCTTGTTGACTGCAGTGGAGATGATGGGACAGAAAAAACTCCTGAATCGGCCTTTCTCAATAAGAAATCTGCTCTTTTGCAGCTTGTGGAGGGAAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
-accactg
- - - - - - - - - - - - - - - - - agaccca
- - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - ggaaata