1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcatgatctctttctcaaaacattgtcataccatcgacatcttcatgggttttcttagcagttgatgtatttttgtttaattctctttgtagGCAGAGGCTGAGAAAAAGCTGGTACAGAAGCTAATCAATTTGGGGTACACTAGGCCAAAATCTGAAGGTTCAACCTCATAAGAGATGCCCGAGGACTAAC
species | Vitis vinifera |
transcript | Vv05s0020g00040.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCAATATAATTCTGGCTTGCAATATTCCTAAAAATAACCCGATGCTGGAG GCAGAGGCTGAGAAAAAGCTGGTACAGAAGCTAATCAATTTGGGGTACACT
genomic: TCAATATAATTCTGGCTTGCAATATTCCTAAAAATAACCCGATGCTGGAGgcatgatctc ... ctctttgtagGCAGAGGCTGAGAAAAAGCTGGTACAGAAGCTAATCAATTTGGGGTACACT
catcttcatgggttttcttagcagttgatgtatttttgtttaattctctttgtagGCAGAGGCTGAGAAAAAGCTGGTACAGAAGCTAATCAATTTGGGGTACACTAGGCCAAAATCTGAAGGTTCAACCTCATAAGAGATGCCCGAGGACTAAC
gtttaat putative branch site (score: 4)
ttctctttgt CT-rich tract
ttgatgtatttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgatctctttctcaaaacattgtcataccatcgacatcttcatgggttttcttagcagttgatgtatttttgtttaattctctttgtagGCAGAGGCTGAGAAAAAGCTGGTACAGAAGCTAATCAATTTGGGGTACACTAGGCCAAAATCTGAAGGTTCAACCTCATAAGAGATGCCCGAGGACTAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG