1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcaatgagtcagcctgttacagtttgaagttgtttagttaccagattcatcaatagtttttgtcttagtttccttctaaattcatggtgcactcttgcagGGAATCAGGTCAGACTGGTGGTGGCACAG
species | Vitis vinifera |
transcript | Vv04s0210g00220.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCA GGAATCAGGTCAGACTGGTGGTGGCACAGEST: gi|71877103|gb|DT026158.1|DT026158
genomic: ACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCAgtaagtgagg ... actcttgcagGGAATCAGGTCAGACTGGTGGTGGCACAG
EST: ACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCA GGAATCAGGTCAGACTGGTGGTGGCACAGEST: gi|110695633|gb|EE073874.1|EE073874
genomic: ACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCAgtaagtgagg ... actcttgcagGGAATCAGGTCAGACTGGTGGTGGCACAG
EST: ACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCA-CAATCAAGCCA GGGATCAAGTCAAACTGGTGGGTGGCACAGEST: gi|110360433|gb|EC923529.1|EC923529
genomic: ACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCAgtaagtgagg ... actcttgcagGGAATCAGGTCAGACTGGTGG-TGGCACAG
EST: ACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCA GGAATCAGGTCAGACTGGTGGTGGCACAGEST: gi|30135176|gb|CB920514.1|CB920514
genomic: ACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCAgtaagtgagg ... actcttgcagGGAATCAGGTCAGACTGGTGGTGGCACAG
EST: ACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCA GGAATCAGGTCAGACTGGTGGTGGCACAGEST: gi|110385709|gb|EC950257.1|EC950257
genomic: ACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCAgtaagtgagg ... actcttgcagGGAATCAGGTCAGACTGGTGGTGGCACAG
EST: ACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCA GGAATCAGGTCAGACTGGTGGTGGCACAG
genomic: ACTTTACAGCAATCTCTTCTGTCTCAGCTTGGTCGCCAACAATCAAGCCAgtaagtgagg ... actcttgcagGGAATCAGGTCAGACTGGTGGTGGCACAG
ttcatcaatagtttttgtcttagtttccttctaaattcatggtgcactcttgcagGGAATCAGGTCAGACTGGTGGTGGCACAG
ttctaaa putative branch site (score: 2)
cactctt putative PPT
aatagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatgagtcagcctgttacagtttgaagttgtttagttaccagattcatcaatagtttttgtcttagtttccttctaaattcatggtgcactcttgcagGGAATCAGGTCAGACTGGTGGTGGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
-caatgag
- - - - - - -ctgttac
- - - - - - - - - - - - - - - - - - - - - - - tcatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgg