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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttataatagtaacaccttatttgataagatcatttgatggaaatttattgacagagggatcctcactcttttaaaaaaaaattatggtatagGAAAGTGATTGGAGCCAGATATTATTTGAGTGGCTATGAAGCTGAAGAAGATCTGATAACGTCTGTGTCATTCAAATCCCCTAGGGACAGTTCTGGTCAT

Basic information

species Vitis vinifera
transcript Vv04s0044g01970.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01970.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G09420.1 (Glycine max), 3'ss of exon 3
-------gttttataatagtaacaccttatttgataagatcatttgatggaaatttattgacagagggatcctcactcttttaaaaaaaaattatggtatagGAAAGTGATTGGAGCCAGATATTATTTGAGTGGCTATGAAGCTGAAGAAGATCTGATAACGTCTGTGTCATTCAAATCCCCTAGGGACAGTTCTGGTCAT
       |||  || |||    ||  ||||||   |   | | |  || |  |||   |   ||  |  || | | || ||    ||  | |||||||||||||||||||| ||||| ||||| ||  | |||||  ||||||| ||||||||       |     || || |||| |||  | || || || || ||||||
gtttctggttgaatcatatcctca--ttatttttaagtttgactacataggcattagcttctagctgtgtcat-attcattggttaatcatttatggtatagGAAAGTGATAGGAGCAAGATACTACATCAGTGGACATGAAGCAGAAGAAGAGTCAGACAGAGAAGTCTCTTTCATATCTGCCAGAGATAGCTCAGGTCAT

upper sequence: Vv04s0044g01970.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G36000.1 (Glycine max), 3'ss of exon 5
gttt----tataatagtaacaccttatttgataagatc-atttgatggaaatttattgacagagggatcctcactcttttaaaaaaaaattatggtatagGAAAGTGATTGGAGCCAGATATTATTTGAGTGGCTATGAAGCTGAAGAAGATCTGATAACGTCTGTGTCATTCAAATCCCCTAGGGACAGTTCTGGTCAT
||||    |  |||  |  |  | || ||  |||| |  | ||  |||  |||   |   || |   || | | || ||    ||  | |||||| ||||||||||||| ||||| ||||| ||  |||||||  ||||||| |||||||        |     || || |||| |||  | || || || || ||||||
gtttctggttgaatcatttcctcataatttttaagtttgactttttgggcattggcttctagcgttgtcat-attcattggttaatcatttatggaatagGAAAGTGATAGGAGCTAGATACTACATGAGTGGACATGAAGCAGAAGAAGGGTCAGACAGAAAAGTCTCTTTCAGATCTGCCAGAGATAGCTCAGGTCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaaatttattgacagagggatcctcactcttttaaaaaaaaattatggtatagGAAAGTGATTGGAGCCAGATATTATTTGAGTGGCTATGAAGCTGAAGAAGATCTGATAACGTCTGTGTCATTCAAATCCCCTAGGGACAGTTCTGGTCAT
                      tcctcac  putative branch site (score: 2)
                           actcttttaaaaaaaa  TA-rich tract