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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaagattaagtatctgtttttagcttaaggttggttattgaattgtctttttatggtctataattttgaattactagtcatttactttttcagacattgaaagtgaactattccttttcttttacttgtctttcttagGCTGGCATTGGTACAGATGCAACAATGCATGATCACATAAAAAAGCTGCTGGATCGGTTTTATGCAACTAAGGACTCAAATACTCGTTTCTCACCAACAA

Basic information

species Vitis vinifera
transcript Vv04s0044g01570.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os03g06900.1 (Oryza sativa), 3'ss of exon 11
gtaatgaagattaagtatctgtttttagcttaaggttggttattgaattgtctttttatggtctataattttgaattactagt--catttactttttcagacattgaaagtgaactattccttttcttt-tacttgtctttcttagGCTGGCATTGGTACAGATGCAACAATGCATGATCACATAAAAAAGCTGCTGGATCGGTTTTATGCAACTAAGGACTCAAATACTCGTTTCTCACCAACAA
                                               |||||  | |      ||  |||||    |   | |  ||| |   | || ||   | |  | | || ||||    |  ||    | | ||  |   |||| || ||||| || |||||||| ||||||||||||||||||||| | || || || | ||||||||| || ||  ||||||| || ||||| |||||||
---------------------------------------------tcttgtcaatctgcaacataatattttcttgtggcaatatcatatgtatattgagttgt-gccactaaaatatttgactgattgactcctttcgcttccagGCAGGAATTGGCACTGATGCAACGATGCATGATCACATAAAAAAGTTACTTGACCGTTGTTATGCAACCAAAGATGCAAATACACGGTTCTCCCCAACAA

upper sequence: Vv04s0044g01570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G470438_T04 (Zea mays), 3'ss of exon 4
gtaatgaagattaagtatctgtttttagcttaaggttggttattgaattgtctttttat---ggtctataattttgaattact--agtcatttactttttcagacattgaaagtgaact-attccttttcttttacttgtctttcttagGCTGGCATTGGTACAGATGCAACAATGCATGATCACATAAAAAAGCTGCTGGATCGGTTTTATGCAACTAAGGACTCAAATACTCGTTTCTCACCAACAA----
||||  || | |   | | |      |  ||    ||  |||| | | |  |||  |||   |   |      |||    |||  |  ||| ||| | | || |  || |||     |  |||     | || |  || | ||||  |||| || ||||| || |||||||| ||||||||||||||||||||| |||| || || | ||||||||| || ||   ||| || |||||||| || ||||    
gtaa--aaaaatccttcttttaacccacgttgtatttttttatggcaataacttcgtattcagaattggtggattgtgccacttaatgcatctacatatccataatttaaaatcatgcagatttgacattttcttattatatttcc-aggcagGAATTGGCACTGATGCAACCATGCATGATCACATAAAAAAGTTGCTTGACCGTTGTTATGCAACCAAAGATGAAAACACACGTTTCTCCCCGACAAATCT

upper sequence: Vv04s0044g01570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G470438_T05 (Zea mays), 3'ss of exon 4
gtaatgaagattaagtatctgtttttagcttaaggttggttattgaattgtctttttat---ggtctataattttgaattact--agtcatttactttttcagacattgaaagtgaact-attccttttcttttacttgtctttcttagGCTGGCATTGGTACAGATGCAACAATGCATGATCACATAAAAAAGCTGCTGGATCGGTTTTATGCAACTAAGGACTCAAATACTCGTTTCTCACCAACAA
||||  || | |   | | |      |  ||    ||  |||| | | |  |||  |||   |   |      |||    |||  |  ||| ||| | | || |  || |||     |  |||     | || |  || | ||||  |||| || ||||| || |||||||| ||||||||||||||||||||| |||| || || | |||||||||                                
gtaa--aaaaatccttcttttaacccacgttgtatttttttatggcaataacttcgtattcagaattggtggattgtgccacttaatgcatctacatatccataatttaaaatcatgcagatttgacattttcttattatatttcc-agGCAGGAATTGGCACTGATGCAACCATGCATGATCACATAAAAAAGTTGCTTGACCGTTGTTATGCAAC--------------------------------

upper sequence: Vv04s0044g01570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G470438_T02 (Zea mays), 3'ss of exon 12
gtaatgaagattaagtatctgtttttagcttaaggttggttattgaattgtctttttat---ggtctataattttgaattact--agtcatttactttttcagacattgaaagtgaact-attccttttcttttacttgtctttcttagGCTGGCATTGGTACAGATGCAACAATGCATGATCACATAAAAAAGCTGCTGGATCGGTTTTATGCAACTAAGGACTCAAATACTCGTTTCTCACCAACAA
||||  || | |   | | |      |  ||    ||  |||| | | |  |||  |||   |   |      |||    |||  |  ||| ||| | | || |  || |||     |  |||     | || |  || | ||||  |||| || ||||| || |||||||| ||||||||||||||||||||| |||| || || | ||||||||| || ||   ||| || |||||||| || ||||
gtaa--aaaaatccttcttttaacccacgttgtatttttttatggcaataacttcgtattcagaattggtggattgtgccacttaatgcatctacatatccataatttaaaatcatgcagatttgacattttcttattatatttcc-agGCAGGAATTGGCACTGATGCAACCATGCATGATCACATAAAAAAGTTGCTTGACCGTTGTTATGCAACCAAAGATGAAAACACACGTTTCTCCCCGACAA

upper sequence: Vv04s0044g01570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA06G16200.1 (Glycine max), 3'ss of exon 12
gtaatgaagattaagtatctgtttttagcttaaggttggttattgaattgtctttttatggtctataattttgaattactagtcatttactttttcagacattgaaagtgaactattccttttcttttacttgtctttcttagGCTGGCATTGGTACAGATGCAACAATGCATGATCACATAAAAAAGCTGCTGGATCGGTTTTATGCAACTAAGGACTCAAATACTCGTTTCTCACCAACAA
             || |||||       || ||   |   |||| ||   |   || ||  | | |  | |  || | | | | || | |  ||  | | ||||| | |    | |    ||  ||||| || |  ||   ||||    |||||||||||||| |||||||| |||||||| || ||| |||| ||||| | |||||||||||||||    |  ||||||||| ||||||| |
-----------gtagaatctgaca--gactgaacaata--tatttaaaaat---ttgatatttttttgtgtgaaagt-caaattatgtgccgtt--aaatattgacaat----tgtattgttgtttttatttcttcttaaaagGCGAAAATTGGTACAGATGCTACAATGCAAGATCACATCAAGAAGATGCTTGATCGATCTTATGCAACTAAGGATAGTAGCACTCGTTTCACACCAACTA

upper sequence: Vv04s0044g01570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ13984 (Selaginella moellendorffii), 3'ss of exon 12
gtaatgaagattaagtatctgtttttagcttaaggttggttattgaattgtctttttatggtctataattttgaattactagtcatttactttttcagacattgaaagtgaactattccttttcttttacttgtctttcttagGCTGGCATTGGTACAGATGCAACAATGCATGATCACATAAAAAAGCTGCTGGATCGGTTTTATGCAACTAAGGACTCAAATACTCGTTTCTCACCAACAA
                                                                                 ||  |||  |  |||   ||||   |  || ||      | | |    |           |||  || ||||| || ||||| || ||||||||||||||||||||||||||||| |||   || || || || ||  |  | || || || |  || ||||
---------------------------------------------------------------------------------gtggtttcttagttccagcattttcaa-gacctgaattctctgtgcggcc----------agGAGGGAATTGGAACGGATGCTACTATGCATGATCACATAAAAAAGCTGCTGGACCGGCGCTACGCTACCAAAGATGCGCAGACACGCTTTTGTCCCACAA

upper sequence: Vv04s0044g01570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ28114 (Selaginella moellendorffii), 3'ss of exon 12
gtaatgaagattaagtatctgtttttagcttaaggttggttattgaattgtctttttatggtctataattttgaattactagtcatttactttttcagacattgaaagtgaactattccttttcttttacttgtctttcttagGCTGGCATTGGTACAGATGCAACAATGCATGATCACATAAAAAAGCTGCTGGATCGGTTTTATGCAACTAAGGACTCAAATACTCGTTTCTCACCAACAA
                                                                                 ||  |||  |  |||   ||||   |  || ||      | | | |  |           |||  || ||||| || ||||| || ||||||||||||||||||||||||||||| |||   || || || || ||  |  | || || || |  || ||||
---------------------------------------------------------------------------------gtggtttcttagttccagcattttcaa-gacctgaattctctgtgtggcc----------agGAGGGAATTGGAACGGATGCTACTATGCATGATCACATAAAAAAGCTGCTGGACCGGCGCTACGCTACCAAAGATGCGCAGACACGCTTTTGTCCCACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttttcagacattgaaagtgaactattccttttcttttacttgtctttcttagGCTGGCATTGGTACAGATGCAACAATGCATGATCACATAAAAAAGCTGCTGGATCGGTTTTATGCAACTAAGGACTCAAATACTCGTTTCTCACCAACAA
                        ctattccttttctttt  CT-rich tract
                               ttttctttta  TA-rich tract