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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaattctcatattgttctttttattagcctttcctactagttagcttgtgttaagttcttacttgcatgtaaaaatgataccttctaatgcagCTAGCAGCTGATATGCAACGCTTTTCTAGGCCTGAGCGGCGCATCAATGGCCCTACAATAACTCATCTCTG

Basic information

species Vitis vinifera
transcript Vv04s0043g00740.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0043g00740.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G43970.1 (Glycine max), 3'ss of exon 5
gtataaattctcatattgttctttttattagcctttcctactagttagcttgtgttaagttcttacttgcatgtaaaaatgataccttctaatgcagCTAGCAGCTGATATGCAACGCTTTTCTAGGCCTGAGCGGCGCATCAATGGCCCTACAATAACTCATCTCTG
|||  |  | |  | |  |  ||| |   |  |||  |        | |  |  |||     |||  |  || |  || ||  |  || |  ||||| |||| ||||| |||||||| |||||||||||||| || ||||| ||||||||||||||| ||||| | ||
gtaccagatgttctttattattttatgagaaacttagccgg-----atccagacttagcacattaagtaaatctgtaa-tgtcatttttt--tgcagTTAGCTGCTGACATGCAACGTTTTTCTAGGCCTGAACGACGCATTAATGGCCCTACAATATCTCATTTGTG

upper sequence: Vv04s0043g00740.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G41350.1 (Glycine max), 3'ss of exon 5
-----gtataaattct-catattgttc---tttttattagcctttcctactagttagcttgtgttaagttct------tacttgcatgtaaaaatgataccttctaatgcagCTAGCAGCTGATATGCAACGCTTTTCTAGGCCTGAGCGGCGCATCAATGGCCCTACAATAACTCATCTCTG
     | ||    | | |||||| | |     |||||||   | ||  |  | || ||  |    |   | |      ||  || || |  |||||  |   | |  || || |||| ||||| |||||||| ||||||||||||||||| ||||| ||||| ||||||||| ||||| | ||
gtacaggatgttctttacatattatacaatcctttattattttatcagaa-acttggccggatccagactttgcacattaagtgaatctgtaaatgccattgtttt-tgtagTTAGCTGCTGACATGCAACGTTTTTCTAGGCCTGAGCGACGCATTAATGGTCCTACAATATCTCATTTGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttagcttgtgttaagttcttacttgcatgtaaaaatgataccttctaatgcagCTAGCAGCTGATATGCAACGCTTTTCTAGGCCTGAGCGGCGCATCAATGGCCCTACAATAACTCATCTCTG
                                            ttctaat  putative branch site (score: 2)
                                        taccttct  CT-rich tract
                            atgtaaaaatgata  TA-rich tract