Sequence
atgc intronic sequence ATGC exonic sequence...ctaggtgtgaaccttcttggaattgcttgccacacatgtgaataatttcattattttagcctaaggttgtataaatttacacgtgtgttacatgctacagAGTGATTCATATCAAGCAACAGGGTGCTACAACCTTCTATGTTCAGGATTTGTGCAGACCAACAGTAAAATAGCCATCGGAGCGGCCATTTCTCCGGTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G43900.1 (Glycine max), 3'ss of exon 7
ctaggtgtgaaccttcttggaattgcttgccacacatgtgaataatttcattattttagcctaaggttgtataaatttacacgtgtgtt-acatgctacagAGTGATTCATATCAAGCAACAGGGTGCTACAACCTTCTATGTTCAGGATTTGTGCAGACCAACAGTAAAATAGCCATCGGAGCGGCCATTTCTCCGGTGT
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-aaaattaaacccatgtatttattactcagaaaacaattattgggatagtttgcccttgagtggaaatttataaattttgtctagtttttgggtgatgcagAGTGACTCATATCAAGCAACCGGATGCTACAACCTTCTTTGTGCGGGTTTTGTGCAAACAAATGGCAGGATAGCCATTGGAGCTGCCATTTCCCCCATCT
upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G41280.1 (Glycine max), 3'ss of exon 5
ctaggtgtgaaccttcttggaattgcttgccacacatgtgaataatttcattattttagcctaaggttgtataaatttacacgtgtg----ttacatgctacagAGTGATTCATATCAAGCAACAGGGTGCTACAACCTTCTATGTTCAGGATTTGTGCAGACCAACAGTAAAATAGCCATCGGAGCGGCCATTTCTCCGGTGT
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----attaaactcatgtatttattactcagaaaacaattattgggatagtttgcccttgagtggagatttataaattttgtctagtttcttttgggtgatgcagAGTGACTCATATCAAGCAACCGGATGCTACAACCTTCTTTGTGCGGGTTTTGTGCAAACAAATGGCAGGATAGCCATTGGAGCTGCCATTTCCCCCATCT
upper sequence: Vv04s0043g00560.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G18460.1 (Arabidopsis thaliana), 3'ss of exon 5
ctaggtgtgaaccttcttgga--attgcttgccacacatgtgaataatttcattattttagcctaaggttgtat---aaatttaca-cgtgtgttacat-gctacagAGTGATTCATATCAAGCAACAGGGTGCTACAACCTTCTATGTTCAGGATTTGTGCAGACCAACAGTAAAATAGCCATCGGAGCGGCCATTTCTCCGGTGT
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-------aaattgttatttgatcattgcttggcaataatttggttaaacaattttttttggtttttgagcatatcctaaactgatggtaatttttgtattgttaaagAGTGATTCATATCAAGCAACAGGATGTTACAATCTTCTATGTTCGGGATTTATCCAAACAAATAACAAGATTGCCATTGGAGCAGCCATATCTCCTCTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcattattttagcctaaggttgtataaatttacacgtgtgttacatgctacagAGTGATTCATATCAAGCAACAGGGTGCTACAACCTTCTATGTTCAGGATTTGTGCAGACCAACAGTAAAATAGCCATCGGAGCGGCCATTTCTCCGGTGT
ttgtataaatttaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctaggtgtgaaccttcttggaattgcttgccacacatgtgaataatttcattattttagcctaaggttgtataaatttacacgtgtgttacatgctacagAGTGATTCATATCAAGCAACAGGGTGCTACAACCTTCTATGTTCAGGATTTGTGCAGACCAACAGTAAAATAGCCATCGGAGCGGCCATTTCTCCGGTGT
- - - - - - -ttcttgg
- - - - - - - - - - - ttgcttg
- - - - - - - - - - - - - - -ccacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgtgt