Sequence
atgc intronic sequence ATGC exonic sequence...taggagcagaaatatgttctgaagtactattgttttaatccaaaaactgaaattctcccttgaaactcatttttgcaccatctttaaaaacttcatatagGTGGAATCTGGGAAACTGGTTCTGGAAGATGCTGAATTTGACTTGGGACGAGAACTTGAAGGACTCGTCGATATGTTCTCTGTGCAGTGCATTAACCACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03680.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G05220.1 (Glycine max), 3'ss of exon 5
-------------------------taggagcagaaatatgttctgaagtactattgttttaatccaaaaactgaaatt--ctcccttgaaactcatttttgcaccatctttaaaaacttcatatagGTGGAATCTGGGAAACTGGTTCTGGAAGATGCTGAATTTGACTTGGGACGAGAACTTGAAGGACTCGTCGATATGTTCTCTGTGCAGTGCATTAACCACA
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gtgagctataagctaagcctttttgtccaagaagatttaaattccaatgcaaaaattcttttaccattgcgacaaaactgccttcattccaaaaaatatttctaatattttataaaa-----tatagGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTGGGGCGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACA
upper sequence: Vv04s0023g03680.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G36950.1 (Glycine max), 3'ss of exon 5
---taggagcagaaatatgttctgaagtactattgttttaatccaaaaactgaaattctcccttgaaactcatttttgcaccatctttaaaaacttca-----tatagGTGGAATCTGGGAAACTGGTTCTGGAAGATGCTGAATTTGACTTGGGACGAGAACTTGAAGGACTCGTCGATATGTTCTCTGTGCAGTGCATTAACCACA
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gtgagatattagctaaacattttgttcaagaataattaaaaactaatt-ccaggtttctttaccactacacttctgccaaaaacttcctaatattatgaagactttagGTGGAATCTGGAAAACTGGTCCTAGAAGATGCCGAATTTGACTTGGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTTCAGTGCATTAACCATA
upper sequence: Vv04s0023g03680.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G08310.1 (Glycine max), 3'ss of exon 5
---taggagcagaaatatgttctgaagtactattgttttaatccaaaaactgaaattctcccttgaaactcatttttgc-accatctt--taaaaacttca-----tatagGTGGAATCTGGGAAACTGGTTCTGGAAGATGCTGAATTTGACTTGGGACGAGAACTTGAAGGACTCGTCGATATGTTCTCTGTGCAGTGCATTAACCACA
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gtgagatattagctaaatattttgttcaagaataattaaaaactaa---ttccaagtttctttaccactgcacttctgccaaaatcttcctaatagtatcaagacttttagGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTAGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTTCAGTGCATGAACCACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actgaaattctcccttgaaactcatttttgcaccatctttaaaaacttcatatagGTGGAATCTGGGAAACTGGTTCTGGAAGATGCTGAATTTGACTTGGGACGAGAACTTGAAGGACTCGTCGATATGTTCTCTGTGCAGTGCATTAACCACA
tttaaaaacttcatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taggagcagaaatatgttctgaagtactattgttttaatccaaaaactgaaattctcccttgaaactcatttttgcaccatctttaaaaacttcatatagGTGGAATCTGGGAAACTGGTTCTGGAAGATGCTGAATTTGACTTGGGACGAGAACTTGAAGGACTCGTCGATATGTTCTCTGTGCAGTGCATTAACCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - -agaaata
- - - - - - - - - - - - - - - - - - aatccaa
- - - - - - - - - - - - - - - - - - - - - -aaactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttaaaaa