Sequence
atgc intronic sequence ATGC exonic sequencegtaacaacattctgaaagcagtccagctattactgatgaacgcaaatattaaatatcctgcgaattcttgcagCCCAGAGACAAATAGGGGAGACCGCACTTAATGAAACAAGCTCTAGATCTCATCAAATTCTCAGACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03060.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G07950.1 (Glycine max), 3'ss of exon 5
------------------------------------------------------------------------gtaacaacattctgaaagca----gtccagcta----ttactgatgaacgcaaat-attaaatatcctgcgaattcttgcagCCCAGAGACAAATAGGGGAGACCGCACTTAATGAAACAAGCTCTAGATCTCATCAAATTCTCAGACTG
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gtaagggtaaggagggtttggatggttcttgtttcaatagagttgcctagactgaacatatatctttttgttatattttcctctttaaaaaaatttgtccagctagagctaactgcttagtgcttatcgttcaattgattgc--atttttgcagCTCAAAGGCAGATAGGGGAGACAGCACTGAATGAAGCAAGCTCCAGATCTCATCAAATTCTAAGACTG
upper sequence: Vv04s0023g03060.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G05650.1 (Glycine max), 3'ss of exon 5
---------------------------------gtaacaacattctgaaagcagtccagctattactgatgaacgcaaatattaaatatcctgcgaattcttgcagCCCAGAGACAAATAGGGGAGACCGCACTTAATGAAACAAGCTCTAGATCTCATCAAATTCTCAGACTG
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gtaaggactaaggataatttggatgaactcgcttcaattgagttgtacagatttactttctttgtctatttttctttttgcttaattttcctc--attactttcagCTCAAAGGCAGATAGGGGAGACTGCTCTGAATGAAGTGAGCTCCAGATCTCATCAGATTCTCAGACTG
upper sequence: Vv04s0023g03060.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G24250.1 (Glycine max), 3'ss of exon 5
-------------------------------------------------------------------------------------gtaacaacattctgaaa--gcagtccagctattactgatgaacgcaaatatta-aatatcctgcgaattcttgcagCCCAGAGACAAATAGGGGAGACCGCACTTAATGAAACAAGCTCTAGATCTCATCAAATTCTCAGACTG
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gtagggactaaggataatttgaatgaccttgcttcaattgagttatacagacttactttctttgtctatttttctttttgcttaattttcctcattacaaatcttctgtccagctagagctgactg-cttagttatcataaaattgattgcattttttcagCTCAAAGGCAGATAGGGGAGACTGCCCTGAATGAAGTGAGCTCCAGATCTCATCAGATTCTCAGACTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagtccagctattactgatgaacgcaaatattaaatatcctgcgaattcttgcagCCCAGAGACAAATAGGGGAGACCGCACTTAATGAAACAAGCTCTAGATCTCATCAAATTCTCAGACTG
tactgat putative branch site (score: 2)
ttcttgc putative PPT
aaatattaaatatcct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacaacattctgaaagcagtccagctattactgatgaacgcaaatattaaatatcctgcgaattcttgcagCCCAGAGACAAATAGGGGAGACCGCACTTAATGAAACAAGCTCTAGATCTCATCAAATTCTCAGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT