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gtatatacaagaagatatttaagcaaaattttgttcatttttctttgaaaatttgttttcttccatgctgagatttctttggtgtctgtattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCATGATGGAGAAG
species | Vitis vinifera |
transcript | Vv04s0023g02970.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCG GGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCATEST: gi|30133248|gb|CB918587.1|CB918587
genomic: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaa ... tattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
EST: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCG GGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCATEST: gi|110698037|gb|EE075591.1|EE075591
genomic: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaa ... tattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
EST: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCG GTTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCATEST: gi|110718343|gb|EE095064.1|EE095064
genomic: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaa ... tattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
EST: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCG GGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCATEST: gi|294963767|gb|GW836617.1|GW836617
genomic: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaa ... tattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
EST: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCG GGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCATEST: gi|110730101|gb|EE106793.1|EE106793
genomic: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaa ... tattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
EST: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCG GGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCATEST: gi|27586273|gb|CB008968.1|CB008968
genomic: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaa ... tattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
EST: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCG GGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
genomic: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaa ... tattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
tttgaaaatttgttttcttccatgctgagatttctttggtgtctgtattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCATGATGGAGAAG
aaatttgttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatacaagaagatatttaagcaaaattttgttcatttttctttgaaaatttgttttcttccatgctgagatttctttggtgtctgtattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCATGATGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA