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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctggttttacatagatattttgcaacaattttttccttatatgatgtaaggatatatattttttatacttttttataggacaatgacatgcattgtaacacagGTATGAAATTGACAAAGTCACTGTTGGACAACGTTTAGATTTAAATCTTGAAAGGGG

Basic information

species Vitis vinifera
transcript Vv04s0023g02930.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02930.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G24320.1 (Glycine max), 3'ss of exon 5
gtctggttttacatagatattttgcaacaatt--ttttccttatatgatgtaaggatatatattttttatact----tttttataggacaatgacatgcattgtaacacagGTATGAAATTGACAAAGTCACTGTTGGACAACGTTTAGATTTAAATCTTGAAAGGGG
       | | | |    | ||| ||||||||   |||  | |  |  | ||    |||  |||| || |  |    ||||||| |  |||| |||||  |||| |  ||||||||| || ||||||||||||| ||| || || |||||||| || |||||||||||
------gtatgctttatcagttt-caacaattggctttgatcaactactatagatgtattcatttgttctgttatgatttttatggttcaatcacatgttttgtgatgcagGTATGAGATAGACAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGAAAGGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggatatatattttttatacttttttataggacaatgacatgcattgtaacacagGTATGAAATTGACAAAGTCACTGTTGGACAACGTTTAGATTTAAATCTTGAAAGGGG
                                            ttgtaac  putative branch site (score: 2)
     atatattttttatact  TA-rich tract