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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttcatccttgtggtttccttgtttgttttccttgtaattgtgatgaaaatctcaatagcgttaatgcctatattttagGTGCCTGTATATATAGCTGAGATATCGCCTCAAAATATGAGGGGAGGCTTAGGATCTGTTAACCAG

Basic information

species Vitis vinifera
transcript Vv04s0023g01860.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71885483|gb|DT034538.1|DT034538
EST:     ATATGGGAAGATTGTTGGAAGGGTTTGGCGTTGGTGTAATCTCTTACACA                         GTGCCTGTATATATAGCTGAGATATCGCCTCAAAATATGAGGGGAGGC
genomic: ATATGGGAAGATTGTTGGAAGGGTTTGGCGTTGGTGTAATCTCTTACACAgtaattttca ... tatattttagGTGCCTGTATATATAGCTGAGATATCGCCTCAAAATATGAGGGGAGGC
EST: gi|161706203|gb|FC054967.1|FC054967
EST:     ATATGGGAAGATTGTTGGAAGGGTTTGGCGTTGGTGTAATCTCTTACACA                         GTGCCTGTATATATAGCTGAGATATCGCCTCAAAATATGAGGGGAGGCTTA
genomic: ATATGGGAAGATTGTTGGAAGGGTTTGGCGTTGGTGTAATCTCTTACACAgtaattttca ... tatattttagGTGCCTGTATATATAGCTGAGATATCGCCTCAAAATATGAGGGGAGGCTTA
EST: gi|71882686|gb|DT031741.1|DT031741
EST:     ATATGGGAAGATTGTTGGAAGGGTTTGGCGTTGGTGTAATCTCTTACACA                         GTGCCTGTATATATAGCTGAGATATCGCCTCAAAATATGAGGGGAGGCTTA
genomic: ATATGGGAAGATTGTTGGAAGGGTTTGGCGTTGGTGTAATCTCTTACACAgtaattttca ... tatattttagGTGCCTGTATATATAGCTGAGATATCGCCTCAAAATATGAGGGGAGGCTTA
EST: gi|71882039|gb|DT031094.1|DT031094
EST:     ATATGGGAAGATTGTTGGAAGGGTTTGGCGTTGGTGTAATCTCTTACACA                         GTGCCTGTATATATAGCTGAGATATCGCCTCAAAATATGAGGGGAGGCTTA
genomic: ATATGGGAAGATTGTTGGAAGGGTTTGGCGTTGGTGTAATCTCTTACACAgtaattttca ... tatattttagGTGCCTGTATATATAGCTGAGATATCGCCTCAAAATATGAGGGGAGGCTTA
EST: gi|71882706|gb|DT031761.1|DT031761
EST:     ATATGGGAAGATTGTTGGAAGGGTTTGGCGTTGGTGTAATCTCTTACACA                         GTGCCTGTATATATAGCTGAGATATCGCCTCAAAATAT
genomic: ATATGGGAAGATTGTTGGAAGGGTTTGGCGTTGGTGTAATCTCTTACACAgtaattttca ... tatattttagGTGCCTGTATATATAGCTGAGATATCGCCTCAAAATAT
EST: gi|71889871|gb|DT038926.1|DT038926
EST:     ATATGGGAAGATTGTTGGAAGGGTTTGGCGTTGGTGTAATCTCTTACACA                         GTGCCTGTATATATAGCTGAGATATCGCCTCAAAATATGAGGGGAGGCTTA
genomic: ATATGGGAAGATTGTTGGAAGGGTTTGGCGTTGGTGTAATCTCTTACACAgtaattttca ... tatattttagGTGCCTGTATATATAGCTGAGATATCGCCTCAAAATATGAGGGGAGGCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttccttgtaattgtgatgaaaatctcaatagcgttaatgcctatattttagGTGCCTGTATATATAGCTGAGATATCGCCTCAAAATATGAGGGGAGGCTTAGGATCTGTTAACCAG
                                   cgttaat  putative branch site (score: 4)
                                             tatatttta  TA-rich tract