1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttcactgaggccttcctgtgcaaattctaaacattttcagtaaatgtgctttttcttgttattgctttgcctgctattaatatttttaatgttttgcagTTGCATACTATTTTGGATGAGATCATTTTTGGCGGTCAAGTGCTAGAAACAAGTTCTGCAGAAGTTATGAAGGCTGTTGAAGAAATATCAAG
species | Vitis vinifera |
transcript | Vv04s0023g01770.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTGCTTCAAAAATGTATGCGAGCTTGACATAGTGTTCAATTATAGCAAG TTGCATACTATTTTGGATGAGATCATATTTGGCGGTCAAGTGCTAGAAACAEST: gi|161719015|gb|FC067635.1|FC067635
genomic: AGTGCTTCAAAAATGTATGCGAGCTTGACATAGTGTTCAATTATAGCAAGgtgatatttt ... tgttttgcagTTGCATACTATTTTGGATGAGATCATTTTTGGCGGTCAAGTGCTAGAAACA
EST: AGTGCTTCAAAAATGTATGCGAGCTTGACATAGTGTTCAATTATAGCAAG TTGCATACTATTTTGGATGAGATCATTTTTGGCGGTCAAGTGCTAGAAACAEST: gi|161718282|gb|FC066033.1|FC066033
genomic: AGTGCTTCAAAAATGTATGCGAGCTTGACATAGTGTTCAATTATAGCAAGgtgatatttt ... tgttttgcagTTGCATACTATTTTGGATGAGATCATTTTTGGCGGTCAAGTGCTAGAAACA
EST: AGTGCTTCAAAAATGTATGCGAGCTTGACATAGTGTTCAATTATAGCAAG TTGCATACTATTTTGGATGAGATCATTTTTGGCGGTCAAGTGCTAGAAACA
genomic: AGTGCTTCAAAAATGTATGCGAGCTTGACATAGTGTTCAATTATAGCAAGgtgatatttt ... tgttttgcagTTGCATACTATTTTGGATGAGATCATTTTTGGCGGTCAAGTGCTAGAAACA
tgtgctttttcttgttattgctttgcctgctattaatatttttaatgttttgcagTTGCATACTATTTTGGATGAGATCATTTTTGGCGGTCAAGTGCTAGAAACAAGTTCTGCAGAAGTTATGAAGGCTGTTGAAGAAATATCAAG
tgctattaatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcactgaggccttcctgtgcaaattctaaacattttcagtaaatgtgctttttcttgttattgctttgcctgctattaatatttttaatgttttgcagTTGCATACTATTTTGGATGAGATCATTTTTGGCGGTCAAGTGCTAGAAACAAGTTCTGCAGAAGTTATGAAGGCTGTTGAAGAAATATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - -ccttcct
- - - - - - - - - - - - - -ctaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgcta