Sequence
atgc intronic sequence ATGC exonic sequencegtttgtgcttgaagtttagtttctgtccttaggtgttgatctcttgattacttagctttgtgtattaacctgttactttctttcctttgttacttcagAATACAACATCAGCAGAAAATAATATCCGCCATCTAGTCTATCTCATAGAGAATAGTATTCTTAACTTACGGGAGGGTCAAGAACAAATGTCATGGTTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G25460.1 (Glycine max), 3'ss of exon 4
gtttgtgcttgaagtttagtttctgt---ccttaggtgttgatctcttgattacttagctttgtgtattaacctgttactttctttcctttgttacttcagAATACAACATCAGCAGAAAATAATATCCGCCATCTAGTCTATCTCATAGAGAATAGTATTCTTAACTTACGGGAGGGTCAAGAACAAATGTCATGGTTGA
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gtttgaactagaa-tgtactttcaataaggcttctctgtacatgactggttaacttaaatctgt---ctaatctgtt-------tccttttgtta-----gAATACAACATCGGCTGAAGATAATATCAGGCATTTAGTCTATCTGTTGGAAAATGCTATCCTGAATCTTTCTGAAGGTCAAGAACAAATGTCATGGTTGA
upper sequence: Vv04s0023g01720.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G06380.1 (Glycine max), 3'ss of exon 4
---------------------------------gtttgtgcttgaa-gtttagtttctgtccttaggtgttgatctcttgattacttagctttgtgtattaacctgt-tactttctttcctttgttacttcagAATACAACATCAGCAGAAAATAATATCCGCCATCTAGTCTATCTCATAGAGAATAGTATTCTTAACTTACGGGAGGGTCAAGAACAAATGTCATGGTTGA
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gtttggacttaggatgtactttcaataaggcttctctgtacatgactggttaactttttttttta-----tggtcagccaaagagatgactggttaacttaatctgtctaatctgtttccttt----tgttagAACACAACATCGGCTGAAGATAATATCAGGCATTTAGTCTATCTGTTGGAAAATGCTATCCTAAATCTTTCTGAAGGTCAAGAACAAATGTCATGGTTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110374991|gb|EC939941.1|EC939941EST: TTCATGATCGACTCGGGAGGACAGTCCTTATAATGAGGCCAGGGATGCAG AATACAACATCAGCAGAAAATAATATCCGCCATCTAGTCTATCTCATAGAG
genomic: TTCATGATCGACTCGGGAGGACAGTCCTTATAATGAGGCCAGGGATGCAGgtttgtgctt ... gttacttcagAATACAACATCAGCAGAAAATAATATCCGCCATCTAGTCTATCTCATAGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgattacttagctttgtgtattaacctgttactttctttcctttgttacttcagAATACAACATCAGCAGAAAATAATATCCGCCATCTAGTCTATCTCATAGAGAATAGTATTCTTAACTTACGGGAGGGTCAAGAACAAATGTCATGGTTGA
tattaac putative branch site (score: 1)
cctgttactttctttc CT-rich tract
tgtattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgtgcttgaagtttagtttctgtccttaggtgttgatctcttgattacttagctttgtgtattaacctgttactttctttcctttgttacttcagAATACAACATCAGCAGAAAATAATATCCGCCATCTAGTCTATCTCATAGAGAATAGTATTCTTAACTTACGGGAGGGTCAAGAACAAATGTCATGGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC