Sequence
atgc intronic sequence ATGC exonic sequence...attcttacttgaagttgctcccaagcactccccatatctcaaaacaggggaaattcttatgagtctgctggctcagaagtttgtttatatggaaatgcagGTATTTGGCTCCAGAGTATGCATCTAGTGGCAAGCTAACAGAGAAATCTGATGTTTTCTCATATGGGGTCATGCTCTTGGAACTCATAACCGGACGAAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G06430.1 (Glycine max), 3'ss of exon 5
attcttacttgaagttg-ctcccaagcactccccatatctcaaaacaggggaaattcttatgagtctgctggctcagaagtttg--tttatatggaaatgcagGTATTTGGCTCCAGAGTATGCATCTAGTGGCAAGCTAACAGAGAAATCTGATGTTTTCTCATATGGGGTCATGCTCTTGGAACTCATAACCGGACGAAGA
| | | | | ||| | | | ||| |||| | | | || | || || | | ||||| ||| ||| | ||||||| |||| ||||| || ||||| ||||| || | ||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||| | ||
--------gtaatttcggcaccccatggtttaatacttctagaaactataaagaaagtgataaaaatgg-ggattaatagtttaattttgcatgttgaaacagGTATCTGGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTTTTCTCATTTGGGGTCATGCTATTAGAACTCATAACTGGAAAACGA
upper sequence: Vv04s0023g01570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G25490.1 (Glycine max), 3'ss of exon 5
attcttacttgaagttgctcccaagcactccccatatctcaaaacaggggaaattcttatgagtctgctggctcagaagtttg--tttatatggaaatgcagGTATTTGGCTCCAGAGTATGCATCTAGTGGCAAGCTAACAGAGAAATCTGATGTTTTCTCATATGGGGTCATGCTCTTGGAACTCATAACCGGACGAAGA
| | || | | || | | || | |||| | | | || | || | | | ||||| ||| ||| || ||||||| | || ||||| || ||||| ||||| || | |||||||||||||| |||||||||| |||||||||||| ||||||||||||||||| | ||
---gtaatttc--gccaccccatggtttaatacctacgtagaaactataaagaaattgataaaaatgg-gaattaatagtttaattttgcatgttaaaacagGTATCTCGCCCCAGAATACGCATCAAGTGGAAAATTGACAGAGAAATCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACCGGGAAACGA
upper sequence: Vv04s0023g01570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G07180.1 (Glycine max), 3'ss of exon 7
----attcttacttgaagttgctcccaagcactcc----ccatatctcaaaacaggggaaattcttatgagtctgctggctcagaagtttgtttatatggaaatgcagGTATTTGGCTCCAGAGTATGCATCTAGTGGCAAGCTAACAGAGAAATCTGATGTTTTCTCATATGGGGTCATGCTCTTGGAACTCATAACCGGACGAAGA
|| | || | | || | | || | || | || | | | || | || | | | | | | | | | ||| || |||||| | || || || |||||||| ||||| || | |||||||| ||||| |||||||||| |||||||||||| |||||||||||||| || ||
gtaatttttcaccaccatattcttttattctctgtaggaacttaaataaagaaatgtgataaactaaaaattaaagggattttgctcatgatatgcatgccaacacagGTACCTAGCCCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACTGGGAAGCGA
upper sequence: Vv04s0023g01570.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G38110.1 (Glycine max), 3'ss of exon 4
---attcttacttgaagt-tgctcccaagcactccccatatctca--aaacaggggaaattcttatgagtctgctgg-ctcagaagtttgtttatatggaaatgcagGTATTTGGCTCCAGAGTATGCATCTAGTGGCAAGCTAACAGAGAAATCTGATGTTTTCTCATATGGGGTCATGCTCTTGGAACTCATAACCGGACGAAGA
||| || | | | || | | || | ||| ||| | | || ||| | || || | | | | | ||| || |||||| | || || || |||||||| ||||| || | |||||||| ||||| |||||||||| ||| |||||||| |||||||||||||| || ||
gtaatttttcatcaccatattcttttattctctgtaggaacttcaataaagaaatgtgataattaaaaatcaaagggattttgctcatgatatgcatgttaacacagGTACCTAGCCCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGACGTTTTCTCATTTGGAGTCATGCTATTGGAACTCATAACTGGGAAGCGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggggaaattcttatgagtctgctggctcagaagtttgtttatatggaaatgcagGTATTTGGCTCCAGAGTATGCATCTAGTGGCAAGCTAACAGAGAAATCTGATGTTTTCTCATATGGGGTCATGCTCTTGGAACTCATAACCGGACGAAGA
aagtttgtttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
attcttacttgaagttgctcccaagcactccccatatctcaaaacaggggaaattcttatgagtctgctggctcagaagtttgtttatatggaaatgcagGTATTTGGCTCCAGAGTATGCATCTAGTGGCAAGCTAACAGAGAAATCTGATGTTTTCTCATATGGGGTCATGCTCTTGGAACTCATAACCGGACGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - -ctcccaa
- - - - - - - - - - - - -cactccc
- - - - - - - - - - - - - - - - - - - -caaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgctg