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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgttgtttgttgagacattaaattggcatgtcattgttgatatattagtgttgtttagttatagtgccattttttgataagcagtctgtacttccttttttccattccatgattaagattttgaatctcatatgtgttgcaaaccttttcttatgatagTCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAACCCCTTCCAAACCCGCCCCCATTGGCACCCTTGCCAGTACTTGCTCCTG

Basic information

species Vitis vinifera
transcript Vv04s0023g00800.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g00800.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G38430.1 (Glycine max), 3'ss of exon 5
gtaattgttgtttgttgagacattaa-attggcatgtcattgttgatatattagtgttgtttagttatagtgccattttttgataagcagtctgtacttccttttttccattccatgattaagattttgaatctcatatgtgttgcaaaccttttcttatgatagTCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAACCCCTTCCAAACCCGCCCCCATTGGCACCCTTGCCAGTACTTGCTCCTG
|| | || | |    ||| |||| || ||     ||| | |||   | |  || |    |||      | | |   | || ||  | ||   |          || || | |   |||  |     |   |  || | ||  || | | |  ||||  ||   |||||||||||||| | |||||||||||||| ||||| || ||||| ||   ||| || ||||| || || || ||||||||  | || ||| |||||||||
gttagtgatctcccatga-acatgaagatccatgtgtgactgtaactgttgtatt----ttttcccccaattcaggtgttagaccatcaagataa--------ttatctaatttttgaggagatactaacaattcctttggcttcctatcaatttccaat--cagTCTATGCTTCTTTTAGATGCCTTCAACAAAGATAGGGCATCTTTGCCTACACCTCTGCCAAATCCACCACCTTTGGCACCTCTTCCTGTAGTTGCTCCTG

upper sequence: Vv04s0023g00800.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G47910.1 (Glycine max), 3'ss of exon 5
gtaattgttgtttgttgagacattaaattggcatgtcattgttgatatattagtgttgtttagttatagtgccattttttgataagcagtctgtacttccttttttccattccatgattaagattttgaatctcatatgtgttgcaaaccttttcttatgatagTCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAACCCCTTCCAAACCCGCCCCCATTGGCACCCTTGCCAGTACTTGCTCCTG
|| | || | | | || | |||| ||  |  |||||  |  |||  |   | || || ||      || | |   | |  ||  | ||   |          || || | |   |||  |     |   | ||| | ||  || | | |  ||||  |  | |||||||||||||| | |||||||||||||| ||||| || ||||| |||  ||| || ||||| || || || ||||||||  | || ||| |||||||||
gttagtggtctctcttta-acatgaaggtc-catgt-gtgattgtaactgttgtatt-ttcccccctaattcatgtgtcagaccatcaagataa--------ttatctaatttttgaggagatactaacaactcctttggcttcctatcaatttccaa--acagTCTATGCTTCTTTTAGATGCCTTCAACAAAGATAGGGCATCTTTGCCCACACCTCTGCCAAATCCACCACCTTTGGCACCTCTTCCTGTAGTTGCTCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161713218|gb|FC063662.1|FC063662
EST:     GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAG                         TCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAC
genomic: GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAGgtaattgttg ... cttatgatagTCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAA
EST: gi|33403422|gb|CF209049.1|CF209049
EST:     GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAG                         TCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAA
genomic: GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAGgtaattgttg ... cttatgatagTCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAA
EST: gi|110731820|gb|EE106576.1|EE106576
EST:     GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAG                         TCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAA
genomic: GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAGgtaattgttg ... cttatgatagTCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAA
EST: gi|110698321|gb|EE075705.1|EE075705
EST:     GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAG                         TCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAA
genomic: GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAGgtaattgttg ... cttatgatagTCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccatgattaagattttgaatctcatatgtgttgcaaaccttttcttatgatagTCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAACCCCTTCCAAACCCGCCCCCATTGGCACCCTTGCCAGTACTTGCTCCTG
                                       ccttttcttat  CT-rich tract
       attaagattttgaat  TA-rich tract