Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcattagcttagccagctgcccggtttatactgccagttgtgagtgtttctacctttaactataatgttgacccttttttccttatctccacaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTGATGAAGTTGCTGATGTTAAGTATGTGTCCCGGAATGATCTGAAAGAGCT

Basic information

species Vitis vinifera
transcript Vv04s0023g00600.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G38550.1 (Glycine max), 3'ss of exon 5
--tcattagcttagccagctgcccggtttatactgccagt-tgtgagtgtttctacctttaacta-taatgttgacccttttttccttatctccacaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTGATGAAGTTGCTGATGTTAAGTATGTGTCCCGGAATGATCTGAAAGAGCT
    | | | ||    | |    |  || | ||| |   |   | |   |  || |  ||||||  ||||  | ||   ||||||||   ||||   ||| |||| || ||||| || ||||||||||| |||||||||||||| || || ||||||||||| |||||| | || ||||||  |||  || |  |||| |||||
ctcaaattgtttcaaaaacattaca-ttgacacttcttatacattacactaactccgcttaactgctaattctaacttctttttcct---ctccttgattgcagTGGACTATCTGCTTTTCATTGTCCGGGATGTTAATGTGAACCCCAATCCTGATGAAGTGGCTGATATCAAATATGTGAACCGTGATCAGTTGAAGGAGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71878369|gb|DT027424.1|DT027424
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|46919457|gb|CN548786.1|CN548786
EST:     CAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|45771600|gb|CN007452.1|CN007452
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110361442|gb|EC924912.1|EC924912
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110405116|gb|EC970650.1|EC970650
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110724888|gb|EE101111.1|EE101111
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|71857088|gb|DT006143.1|DT006143
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCG
EST: gi|349811100|gb|FQ406088.1|FQ406088
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|349827772|gb|FQ422640.1|FQ422640
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|83275115|gb|DV939211.1|DV939211
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|351018393|gb|FQ439205.1|FQ439205
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110691547|gb|EE069777.1|EE069777
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110381312|gb|EC946638.1|EC946638
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|161714509|gb|FC062959.1|FC062959
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|351030753|gb|FQ438591.1|FQ438591
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|351016449|gb|FQ423876.1|FQ423876
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|351014219|gb|FQ434808.1|FQ434808
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110390835|gb|EC955766.1|EC955766
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|349816150|gb|FQ403646.1|FQ403646
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|349821590|gb|FQ408149.1|FQ408149
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|45771470|gb|CN007322.1|CN007322
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110383561|gb|EC947940.1|EC947940
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|27755317|gb|CB036072.1|CB036072
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110721162|gb|EE097848.1|EE097848
EST:     CCGCATGCTTTACAAGGCACCATCAAATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGGCCAAGATGGTAATGGGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110377835|gb|EC942928.1|EC942928
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110381620|gb|EC934948.1|EC934948
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110730975|gb|EE108667.1|EE108667
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCNAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|161714485|gb|FC064460.1|FC064460
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|45771217|gb|CN007069.1|CN007069
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|30303206|gb|CB980000.1|CB980000
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|349833009|gb|FQ416387.1|FQ416387
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAGGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAAGCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|22008526|gb|BQ793560.1|BQ793560
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110384862|gb|EC949328.1|EC949328
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|351031443|gb|FQ446646.1|FQ446646
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110390904|gb|EC955847.1|EC955847
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110409935|gb|EC975610.1|EC975610
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|351017045|gb|FQ424472.1|FQ424472
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|45771365|gb|CN007217.1|CN007217
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGGATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|352794136|gb|FQ479378.1|FQ479378
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|32460389|gb|CD801563.1|CD801563
EST:     TCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: TCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110687512|gb|EE065008.1|EE065008
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|37190401|gb|CF609750.1|CF609750
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|30303272|gb|CB980066.1|CB980066
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATTTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110689856|gb|EE066444.1|EE066444
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|26264645|gb|CA815708.1|CA815708
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|351049295|gb|FQ429038.1|FQ429038
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110730593|gb|EE107853.1|EE107853
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCCAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110384180|gb|EC948599.1|EC948599
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|161717400|gb|FC068871.1|FC068871
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGAGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTC
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTC
EST: gi|83276260|gb|DV940268.1|DV940268
EST:     CCGCATGCTTTACAAGGCACCGTCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCGTTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|161720991|gb|FC070700.1|FC070700
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|77580614|gb|DV219211.1|DV219211
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|30305248|gb|CB982042.1|CB982042
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|351024079|gb|FQ423502.1|FQ423502
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGGCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|83274393|gb|DV938490.1|DV938490
EST:     CCGCATG-TTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110421766|gb|EC988066.1|EC988066
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|83275001|gb|DV939097.1|DV939097
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTGTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110726293|gb|EE101950.1|EE101950
EST:     CCGCATGCTTTACAAAGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|71873106|gb|DT022161.1|DT022161
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|110409938|gb|EC975613.1|EC975613
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|32459739|gb|CD800913.1|CD800913
EST:     GCATGCTTTACAAGGCACCATCAGAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: GCATGCTTTACAAGGCACCATC--AGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
EST: gi|351029622|gb|FQ427462.1|FQ427462
EST:     CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAAC                         TCGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG
genomic: CCGCATGCTTTACAAGGCACCATCAGATGGCAAGTGGGGAGAGCATGAACgtaataatct ... acaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttctacctttaactataatgttgacccttttttccttatctccacaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTGATGAAGTTGCTGATGTTAAGTATGTGTCCCGGAATGATCTGAAAGAGCT
                    tgttgac  putative branch site (score: 3)
                          cccttttttccttatc  CT-rich tract
         tttaactataatgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcattagcttagccagctgcccggtttatactgccagttgtgagtgtttctacctttaactataatgttgacccttttttccttatctccacaattacagTTGATTATCTACTCTTCATTGTCCGAGATGTTAATGTGAATCCAAACCCTGATGAAGTTGCTGATGTTAAGTATGTGTCCCGGAATGATCTGAAAGAGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - ttagcca
- - - - - - - -gctgccc
- - - - - - - - - - - - - - -actgcca
- - - - - - - - - - - - - - - - - - - - tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - -ttctacc