1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagttcttgctggtcgttgactattgaagttgatctttccccccagtagtatatatactgatgacattataatatttgctattggatgcatccagTATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGACCTGTGACCCCCATACAAAACGCACTGTTATTAATTCCAACTCTCCTCAA
species | Vitis vinifera |
transcript | Vv04s0008g06640.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCAAACCATTCAG TATTAAACATGAATACGATGGGGAATGGAATGGCAAGAATCGTCTATTGACEST: gi|71868110|gb|DT017165.1|DT017165
genomic: TTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCAAACCATTCAGgtgagttctt ... atgcatccagTATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGAC
EST: TTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCAAACCATTCAG TATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGACEST: gi|349833321|gb|FQ416699.1|FQ416699
genomic: TTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCAAACCATTCAGgtgagttctt ... atgcatccagTATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGAC
EST: CAAACCATTCAG TATTAAACATGAATACCATGGGGAATGGAATGGCAAGAATCGTCTATTGACEST: gi|33409925|gb|CF215552.1|CF215552
genomic: CAAACCATTCAGgtgagttctt ... atgcatccagTATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGAC
EST: TTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCAAACCATTCAG TATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGACEST: gi|110699448|gb|EE076454.1|EE076454
genomic: TTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCAAACCATTCAGgtgagttctt ... atgcatccagTATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGAC
EST: TTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCAAACCATTCAG TATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGACEST: gi|110723814|gb|EE099106.1|EE099106
genomic: TTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCAAACCATTCAGgtgagttctt ... atgcatccagTATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGAC
EST: TTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCCAACCATTCAG TATTAAACATGAATACTAAGGGGGAATGGAATGGCAAEST: gi|110700412|gb|EE078424.1|EE078424
genomic: TTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCAAACCATTCAGgtgagttctt ... atgcatccagTATTAAACATGAATACGAAGGGG-AATGGAATGGCAA
EST: TTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCAAACCATTCAG TATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGACEST: gi|110699772|gb|EE077065.1|EE077065
genomic: TTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCAAACCATTCAGgtgagttctt ... atgcatccagTATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGAC
EST: TTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCAAACCATTCAG TATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGAC
genomic: TTGCAAACTGACTCAGCAAGGATTGTGGGATTTGAGGTCAAACCATTCAGgtgagttctt ... atgcatccagTATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGAC
ccccagtagtatatatactgatgacattataatatttgctattggatgcatccagTATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGACCTGTGACCCCCATACAAAACGCACTGTTATTAATTCCAACTCTCCTCAA
tactgat putative branch site (score: 2)
tatatatactgatgac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcttgctggtcgttgactattgaagttgatctttccccccagtagtatatatactgatgacattataatatttgctattggatgcatccagTATTAAACATGAATACGAAGGGGAATGGAATGGCAAGAATCGTTTATTGACCTGTGACCCCCATACAAAACGCACTGTTATTAATTCCAACTCTCCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC