1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgttgtaaatcaattatcctaggccataatgtgatgtacttccttatcacgattatggtgttttctttcaataactagtataccttgcaaatgaatgcagAAGAGGGACGACCCAGGGAAGTTCAGGCAATTAGATGAGATAATGTTCGTTAACAGCTATCCTGGATATCAACATTTAATACCCATTGCAGAGAATTGTA
species | Vitis vinifera |
transcript | Vv04s0008g03180.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGATCCCGTTTTCATTATGTTGCCCATTTTTGAGGAAGCTAAGATGAAG AAGAGGGACGACCCAGGGAAGTTCAGGCAATTAGATGAGATAATGTTTGTTEST: gi|71856752|gb|DT005807.1|DT005807
genomic: TTGATCCTGTTTTCATTATGTTGCCCATTTTTGAGGAAGCTAGGATGAAGgtataataat ... atgaatgcagAAGAGGGACGACCCAGGGAAGTTCAGGCAATTAGATGAGATAATGTTCGTT
EST: TTGATCCCGTTTTCATTATGTTGCCCATTTTTGAGGAAGCTAAGATGAAG AAGAGGGACGACCCAGGGAAGTTCAGGCAATTAGATGAGATAATGTTTGTTEST: gi|32267964|gb|CD717123.1|CD717123
genomic: TTGATCCTGTTTTCATTATGTTGCCCATTTTTGAGGAAGCTAGGATGAAGgtataataat ... atgaatgcagAAGAGGGACGACCCAGGGAAGTTCAGGCAATTAGATGAGATAATGTTCGTT
EST: TTGATCCCGTTTTCATTATGTTGCCCATTTTTGAGGAAGCTAAGATGAAG AAGAGGGACGACCCAGGGAAGTTCAGGCAATTAGATGAGATAATGTTTGTT
genomic: TTGATCCTGTTTTCATTATGTTGCCCATTTTTGAGGAAGCTAGGATGAAGgtataataat ... atgaatgcagAAGAGGGACGACCCAGGGAAGTTCAGGCAATTAGATGAGATAATGTTCGTT
atcacgattatggtgttttctttcaataactagtataccttgcaaatgaatgcagAAGAGGGACGACCCAGGGAAGTTCAGGCAATTAGATGAGATAATGTTCGTTAACAGCTATCCTGGATATCAACATTTAATACCCATTGCAGAGAATTGTA
caataac putative branch site (score: 2)
ttttctttcaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgtaaatcaattatcctaggccataatgtgatgtacttccttatcacgattatggtgttttctttcaataactagtataccttgcaaatgaatgcagAAGAGGGACGACCCAGGGAAGTTCAGGCAATTAGATGAGATAATGTTCGTTAACAGCTATCCTGGATATCAACATTTAATACCCATTGCAGAGAATTGTA
- - - aaatcaa
- - - - - - - - - ctaggcc
- - - - - - - - - - - - - - - - - - tacttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttgca