Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttcattactaacgctttttgtttgtgtgtctgggtcctggatttattggttctcctttttctaatggtttgacatacatgggctttcagAGTTTTGAAGAATAATCAGCTGATTGGACCAATTCCTTCAACATTGTCCCAAATTCCAAACTTGAAAATTTT

Basic information

species Vitis vinifera
transcript Vv04s0008g01970.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA14G11220.1 (Glycine max), 3'ss of exon 5
gtaagcttc-attactaacgctttttgtttgtgtgtctgggtcct-ggatttattggttctcctttttctaatggtttgacatacatgggctttcagAGTTTTGAAGAATAATCAGCTGATTGGACCAATTCCTTCAACATTGTCCCAAATTCCAAACTTGAAAATTTT
|| || ||  |||  ||   ||      |||    | | | || | ||||    |  |   |  ||||    || |      ||  | |  | ||||  |||||||||| || ||| |||||||||||||||||||||| ||||| ||||||||  | ||||| ||| |
gtgagtttttattggtatttctccacaattgaaaattttgatctttggatgaggttatgaccagtttttctgtg-taaattgtaatttgtatctcagGATTTTGAAGAACAACCAGTTGATTGGACCAATTCCTTCAACTTTGTCTCAAATTCCTGATTTGAAGATTCT

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA06G05900.2 (Glycine max), 3'ss of exon 6
-----------gtaagcttcattactaacgctttttgtttgtgtgtctgggtcctggatttattggttctcctttttctaatggtttgacatacatgggctttcagAGTTTTGAAGAATAATCAGCTGATTGGACCAATTCCTTCAACATTGTCCCAAATTCCAAACTTGAAAATTTT
           ||    |||  |   |  |   |||| || ||| ||   | |   ||     |  |       ||| |  || ||||   || ||| | | ||||| ||||||| ||||||||||| ||||||||||| ||||||||| | || ||  |||| |||||||| ||| |
gtgagttttttgtgtttttctctttcagtgaggtttggttttgtctcctaggctgtgacaaggttatgacaaggttttt--tgttttgt--taaatgtgttctcagAATTTTGAAAAATAATCAGCTAATTGGACCAATCCCTTCAACACTCTCTCAGGTTCCTAACTTGAAGATTCT

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G34380.1 (Glycine max), 3'ss of exon 6
gtaagcttcattactaacgctttttgtttgt--gtgtctgggtcctggatttattggttctcctttttctaatggtttgacatacatgggctttcagAGTTTTGAAGAATAATCAGCTGATTGGACCAATTCCTTCAACATTGTCCCAAATTCCAAACTTGAAAATTTT
|| ||  |  ||| |   | || |  |   |       ||  |  |||||    |  |   |  ||||    || |      ||  |    | ||||  |||||||||| || ||  |||||||||||||||||||||| ||||| || |||||  | ||||| ||| |
gtgagtatttttattggtgtttctcctcaattgaaaattgatttttggatgaggttatgaccagtttttctgtg-taaattgtaatttttatctcagGATTTTGAAGAACAACCAATTGATTGGACCAATTCCTTCAACTTTGTCTCAGATTCCTGATTTGAAGATTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctggatttattggttctcctttttctaatggtttgacatacatgggctttcagAGTTTTGAAGAATAATCAGCTGATTGGACCAATTCCTTCAACATTGTCCCAAATTCCAAACTTGAAAATTTT
                                                ctttc  CT-rich tract
                     tttttctaat  TA-rich tract