Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgctataatgtctcctggttttggttgaattgttagctgccacatcttgatttcatcattttatttgttgaatcccggctgattttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC

Basic information

species Vitis vinifera
transcript Vv04s0008g01750.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 5
gtacatgctataatgtctcctggttttggttgaattgttagctgccacatcttgatttcatcattttatttgttgaatcccggctgattttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC
||   | | ||||  ||     |||| |  | || |||| |||| | | |  ||||  | | | ||| ||| ||  |     |||| || |  |||||          |||| || || ||||| ||||||||||| ||||| || |||||||| ||||||||||| || || |  ||||| || || ||||| || || || ||  | |
gtttgtac-ataaaatccatccgttt-gaataaaatgtt-gctgtctccttgtgatagcttgaatttttttcttaga----agctgcttcttgttttc----------agGGTGTGCTGGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCGAAGGGCAAGCAAGGACCAATGACTCCTTTACCGGATCTTGTTACCATCCATGCCC

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G093902_T02 (Zea mays), 3'ss of exon 5
gtacatgctataatgtctcctggttttggttgaattgttagctgccacatcttgatttcatcattttatttgttgaatcccggctgattttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC
                      |||| |       | | || ||  |  |  | ||   | ||| | |     |   |    | | ||  ||   ||   | |  |  |||| || |||||||||||||| ||||| ||||| ||||||||||| ||||||||||| || || || |  || || |||||| |||| || ||||||   |
----------------------gtttggtgcttggtatcagatgttatcttattatgcaaacatataacaaaatagctgttag-taatactctagttgacttggcttcagGGTGTGCTTGGTATCAAGGTTAAGATTATGCTGGACTGGGATCCAAAGGGCAAGCAAGGGCCAACCATGCCTTTACCTGATTTGGTTACAATTCACGTGC

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 5
----------------------------------------------gtacatgctataatgtctcctggttttggttgaattgttagctgccacatcttgatttcatcattttatttgttgaatcccggctgattttccttttctatggtgta-tagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC
                                              |    | |  | ||   || ||  |    |||| || |      |  ||| | | |     | ||   ||||  |        |||| |      |  |   || |  ||||| ||  | ||||||||||||||||||||||||||||||||||||||||||||||| || || |  |||||| | || ||| |||| || || || |  |
gtatgttacatatccttggccatttctctgttaactgagtttttctggctcttcccttatacttcttgtatcaaattgagttatct----cagcatttcggtaatg-ctttcagtttgccgttgtgaaactgaatcgaagatattgctgtcttctagGGAGTTTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAAGGACCTATGACTCCACTTCCAGATGTGGTCACCATCCATATGC

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S41_146V6.1 (Physcomitrella patens), 3'ss of exon 5
-------------------------gtacatgctataatgtctc--ctggttttggttgaattgttagctgccacatcttgatttcat---cattttatttgt--tgaatcccggctgattttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC
                         || |   || |  | ||    ||| |||    |    | || | |  ||       || || |   ||  || | |||  || |||   |     |||| || | | |    |  |||| ||  | |||||||| || |||||||||||||||||||| || ||||||||||| || ||||  || ||  | || ||| |||| || || || |  |
gtttgtcgagcagctattcagtggtgtcctctctgtggtctccttgctgatttctcctacggtctttgttttcaagaaaaaatctcgtttgcaagttgtctgtaatgtatcttagaaatgtttcgttattttt----ttcagGGTGTATTGGGTATCAAAGTTAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGACCCATGACCCCTCTTCCAGATGTGGTCACCATCCATATGC

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S29_222V6.1 (Physcomitrella patens), 3'ss of exon 5
--------------------------------------------------gtacatgctataatgtctcctggttttggttgaattgt-tagctgccacatcttgatttcatcattttatttgttgaatcccggctgattttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC
                                                   |  ||  |  | ||| |||    ||   ||  | |   ||| |     ||   | |||||| |||   || | |  |    | |||| ||     |  |      |  |||| ||  | |||||||||||||||||||||||||||||||||||||| ||||| || || ||||  |||||| | || ||| |||| || || ||||  |
gtattaacagatttttttgatacccctatgtttactcctccttgtgcagaattaatcttcgattgtttccatccttgcattatactaaatagttctataattgaggtttcattattccgttggctctactgagcctgaattgaagctattccttcttgcagGGAGTGTTGGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGCAAACAAGGACCCATGACTCCACTCCCAGATGTGGTTACCATCCACATGC

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S487_22V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------gtacatgctataatgtctcctggttttggttgaa---ttgtta-gctgccaca-----tcttgattt--------catcattttatttgttgaatcccggctgattt-tccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC
                |   |   ||  || ||  |  ||   | |  |    | |||  || | |||     || || |||        ||||||||| |      |     | ||  |   |  | |||  |  |||  |||| ||  | ||||||||||| ||||| |||||||||||||| ||||||| |||||| ||  |    |||| | | || ||| ||||||| |||||||  |
gcacgtgtggacattttttgtctaatggtggctgtttcttcatgctagagacctattacacttctacaacgtttcatgtttttaatgctacatcattttctacagaaatatgagacttgtcagttgtcttccttactgtgcagGGAGTATTGGGTATCAAGGTGAAGATTATGCTCGACTGGGACCCCAAGGTCAAGCAAGGATCTGTGACTCTACTTCCAGATGTGGTGACCATTCACATGC

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 5
----gtacatgct-ataatgtctcctggttttggttgaattgttagctgccacatcttgatttcatcatt---ttatttgttgaatcccg---gctga--ttttccttttcta--tggtgt-----atagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC
    ||  ||  | ||| ||| |   |  ||   ||   |     | ||| | || | |   || |  ||    ||| |    ||||| |     |||  | || ||||| ||  |  |||       |||| ||  | || |||||||| |||||||||||||||||||| || ||||||||||| |||||||  || ||  | || ||| |||| ||||| || |  |
gtatgtggatcttcatagtgtttttggtcttcaattttctctgacgatgctagatttcgtcatcgtttttgctctatatacctaatccagtgtattgacgtgttacttttttaattactgttcttggcagGGAGTGTTGGGCATCAAGGTAAAGATCATGCTCGACTGGGACCCAAAGGGCAAGCAAGGCCCCATGACCCCTCTTCCAGATGTGGTTACTATCCATATGC

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S127_74V6.1 (Physcomitrella patens), 3'ss of exon 5
gtacatgctataat-gtctcctggttttggttgaattgt--tagctgccacatcttgatt--tcatcattttatttgt--tgaatcccggctgatt--ttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC
|||||    ||  | |    | |    | | |   || |  ||   |  | || ||||||  |  ||  | |    |   ||||||     ||     || ||||  |||| | || ||||||| || || || ||||| ||||||||||||||||||||||| ||||| ||||| || ||||  |||||| | || ||| | |||||||||||||  |
gtacacaagatgcttgatgtccgtcagtagctcctttttcgtactagaaagatattgattgatagtcggtgttcccgaagtgaatctgaagtggaggattactttggtatg-tttacagGGCGTGCTGGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCAAAGGGGAAGCAAGGACCCATGACTCCACTTCCCGATGTAGTGACTATTCACATGC

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ31038 (Selaginella moellendorffii), 3'ss of exon 5
gtacatgctataatgtctcctggttttggttgaattgttagctgccacatcttgatttcatcattttatttgttgaatcccggctgattttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC
                                                      | |  ||| ||||  ||  || |||| |  |        |    | || ||   |||| ||  | || |||||||| ||||||||||| ||||||||||| |||||||||   || ||  | || ||  |||| ||  ||||||| || ||   ||
----------------------------------------------gtgcaagaactcgatcgttttgatt--tggatccagtttctaagcattggattgtgctg-gcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ34304 (Selaginella moellendorffii), 3'ss of exon 5
gtacatgctataatgtctcctggttttggttgaattgttagctgccacatcttgatttcatcattttatttgttgaatcccggct---gattttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC
                                                |     | |  ||||||||  ||  || |||| |  |       ||   ||    |||     |||| ||  | || |||||||| ||||||||||| ||||||||||| |||||||||   || ||  | || ||  |||| ||  ||||||| || ||   ||
----------------------------------------------gtacaagaactcgatcattttgatt--tggatccagtttctaagcattggattgtgctggctggcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

upper sequence: Vv04s0008g01750.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ34676 (Selaginella moellendorffii), 3'ss of exon 5
gtacatgctataatgtctcctggttttggttgaattgttagctgccacatcttgatttcatcattttatttgttgaatcccggctgattttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC
                                          ||| | | || |||    |   |||   |   |  ||   ||  |||    | ||||         |||| ||  | || |||||||| ||||||||||| ||||||||||| |||||||||   || ||  | || ||  |||| ||  ||||||| || ||   ||
-----------------------------------------gtgcaagaactcgatcgttttgatttggatccagtttctaagc--attggattgttctg------gcagGGGGTTTTGGGGATCAAGGTGAAGATCATGCTGGACTGGGATCCAAAGGGCAAGACCGGGCCGTCGACACCGCTGCCGGACATGGTGACGATCCAAGTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30295730|gb|CB972524.1|CB972524
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|110375300|gb|EC940275.1|EC940275
EST:     GCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: GCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|32247633|gb|CD713452.1|CD713452
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGAT
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGAT
EST: gi|32270022|gb|CD719181.1|CD719181
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|33401617|gb|CF207244.1|CF207244
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTAGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|30301307|gb|CB978101.1|CB978101
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|110728527|gb|EE104173.1|EE104173
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTAGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|352773252|gb|FQ470839.1|FQ470839
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|110690223|gb|EE067133.1|EE067133
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTAGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|110732469|gb|EE107785.1|EE107785
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAAGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|110688348|gb|EE066796.1|EE066796
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTAGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|77578758|gb|DV218182.1|DV218182
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|27582088|gb|CB004783.1|CB004783
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGA
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGA
EST: gi|110709636|gb|EE085271.1|EE085271
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|32272105|gb|CD721264.1|CD721264
EST:     CTGTTAAGGATTACATTGACTCANCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|30253062|gb|CB970613.1|CB970613
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|27586377|gb|CB009072.1|CB009072
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|352782408|gb|FQ470311.1|FQ470311
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|32245818|gb|CD711637.1|CD711637
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|30326710|gb|CD009972.1|CD009972
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGG
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGG
EST: gi|32460064|gb|CD801238.1|CD801238
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAGGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
EST: gi|110708853|gb|EE086870.1|EE086870
EST:     CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAG                         GGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC
genomic: CTGTTAAGGATTACATTGACTCAGCTGTGAGGCATGTTCTCCTCAGACAGgtacatgcta ... tggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatcattttatttgttgaatcccggctgattttccttttctatggtgtatagGGCGTCCTTGGTATCAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGCAAGCAGGGCCCCACAACTCCATTGCCTGATCTGGTGACTATTCACACAC
                          ggctgat  putative branch site (score: 4)
                                ttttccttttctat  CT-rich tract
       attttatttgttgaat  TA-rich tract