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...ggattgtatgcataaaaaaatatttaaatcacaatgtttgagattttgttgtacatggttcagtggtcttaccagaaaatgatatttgaggcatttgtagGGAGGATACAAAGGATTCTATTCTCGAAATACCATTCCTTTAACTCCCAAGGTTGTGAATGACATCCATAAACGTGGTGGTACTGTCCTTGGCACATCAA
species | Vitis vinifera |
transcript | Vv04s0008g00520.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTGCGGCCTTTCCCACATGTATGGCGTCACAAGGATCCTTGGGATAGAT GGAGGATACAAAGGATEST: gi|110713404|gb|EE089294.1|EE089294
genomic: TGTGTGGCCTTTCCCACATGTATGGCGTCACAAGGATCCTTGGGATAGATgtgagtgatt ... gcatttgtagGGAGGATACAAAGGAT
EST: TGTGCGGCCTTTCCCACATGTATGGCGTCACAAGGATCCTTGGGATAGAT GGAGGATACAAAGGATTCTATTCTCGAAATACCATTCCTTTAACTCCCAAGEST: gi|161716176|gb|FC068064.1|FC068064
genomic: TGTGTGGCCTTTCCCACATGTATGGCGTCACAAGGATCCTTGGGATAGATgtgagtgatt ... gcatttgtagGGAGGATACAAAGGATTCTATTCTCGAAATACCATTCCTTTAACTCCCAAG
EST: TGTGCGGCCTTTCCCACATGTATGGCGTCACAAGGATCCTTGGGATAGAT GGAGGATACAAAGGATTCTATTCTCGAAATACCATTCCTTTAACTCCCAAGEST: gi|110718348|gb|EE095077.1|EE095077
genomic: TGTGTGGCCTTTCCCACATGTATGGCGTCACAAGGATCCTTGGGATAGATgtgagtgatt ... gcatttgtagGGAGGATACAAAGGATTCTATTCTCGAAATACCATTCCTTTAACTCCCAAG
EST: TGTGCGGCCTTTCCCACATGTATGGCGTCACAAGGATCCTTGGGATAGAT GGAGGATACAAAGGATTCTATTCTCGAAATACCATTCCTTTAACTCCCAAG
genomic: TGTGTGGCCTTTCCCACATGTATGGCGTCACAAGGATCCTTGGGATAGATgtgagtgatt ... gcatttgtagGGAGGATACAAAGGATTCTATTCTCGAAATACCATTCCTTTAACTCCCAAG
ttgttgtacatggttcagtggtcttaccagaaaatgatatttgaggcatttgtagGGAGGATACAAAGGATTCTATTCTCGAAATACCATTCCTTTAACTCCCAAGGTTGTGAATGACATCCATAAACGTGGTGGTACTGTCCTTGGCACATCAA
gtcttac putative branch site (score: 3)
agaaaatgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggattgtatgcataaaaaaatatttaaatcacaatgtttgagattttgttgtacatggttcagtggtcttaccagaaaatgatatttgaggcatttgtagGGAGGATACAAAGGATTCTATTCTCGAAATACCATTCCTTTAACTCCCAAGGTTGTGAATGACATCCATAAACGTGGTGGTACTGTCCTTGGCACATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - -gtatgca
- - - - - - -aaaaaaa
- - - - - - - - - - - - -aaatcac
- - - - - - - - - - - - - - - - - - - - - - - - - -tacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaat