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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctggcttatatatttttgttaccaccactgcatcacaattaggttgctctattgcaactgcattacttttttatgtggctccaaccctgctatgctaatgttaataaacattcatttcttgcagGCATTTTATTTCCCTTGGGCAATGCTTGCTTTGGATGTTATTTTTGGTTCACAGATTCTGCCAGACCTGTTGGGAATTGTTGCAGGGCATCTATACTATT

Basic information

species Vitis vinifera
transcript Vv04s0008g00510.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351014293|gb|FQ437295.1|FQ437295
EST:     GGGAGTTTCCGAATGCCCAAATTAACTTATATGGACTTGTTCAACTCAAG                         GCATTTTATTTCCCTTGGGCAATGCTTGCTTTGGATGTTATTTTTGGTTCA
genomic: GGGAGTTTCCGAATGCCCAAATTAACTTATATGGACTTGTTCAACTCAAGgtatgctggc ... tttcttgcagGCATTTTATTTCCCTTGGGCAATGCTTGCTTTGGATGTTATTTTTGGTTCA
EST: gi|161721005|gb|FC069627.1|FC069627
EST:     GGGAGTTTCCGAATGCCCAAATTAACTTATATGGACTTGTTCAACTCAAG                         GCATTTTATTTCCCTTGGGCAATGCTTGCTTTGGATGTTATTTTTGGTTCA
genomic: GGGAGTTTCCGAATGCCCAAATTAACTTATATGGACTTGTTCAACTCAAGgtatgctggc ... tttcttgcagGCATTTTATTTCCCTTGGGCAATGCTTGCTTTGGATGTTATTTTTGGTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgtggctccaaccctgctatgctaatgttaataaacattcatttcttgcagGCATTTTATTTCCCTTGGGCAATGCTTGCTTTGGATGTTATTTTTGGTTCACAGATTCTGCCAGACCTGTTGGGAATTGTTGCAGGGCATCTATACTATT
                                         ttcatttctt  CT-rich tract
                          taatgttaataaacat  TA-rich tract