1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtgaatccaatccccttccttttgcttggttgtgatggtttaaggttcatggctattttatttatggtgtttagtgttgagaatggtgcttgctttgcagGGAGCTTAGATCCATTACCAATAGAGAAGTATGTTGTTACATGATTTCATGCAAGAACTCAACCAACATCGATACGGTTATTGACTGGCTTGTAAAGCAT
species | Vitis vinifera |
transcript | Vv03s0091g00970.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGATTGACAAGCCAGGAGCTTTGTCTAAACCAGAGCTGACAGAGCAAAT GGAGCTTAGATCCATTACCAATAGAGAAGTATGTTGTTACATGATTTCATGEST: gi|110702265|gb|EE080781.1|EE080781
genomic: AAGATTGACAAGCCAGGAGCTTTGTCTAAACCAGAGCTGACAGAGCAAATgtaagtggag ... tgctttgcagGGAGCTTAGATCCATTACCAATAGAGAAGTATGTTGTTACATGATTTCATG
EST: AAGATTGACAAGCCAGGAGCTTTGTCTAAACCAGAGCTGACAGAGCAAAT GGAGCTTAGATCCATTACCAATAGAGAAGTATGTTGTTACATGATTTCATGEST: gi|30300622|gb|CB977416.1|CB977416
genomic: AAGATTGACAAGCCAGGAGCTTTGTCTAAACCAGAGCTGACAGAGCAAATgtaagtggag ... tgctttgcagGGAGCTTAGATCCATTACCAATAGAGAAGTATGTTGTTACATGATTTCATG
EST: AAGATTGACAAGCCAGGAGCTTTGTCTAAACCAGAGCTGACAGAGCAAAT GGAGCTTAGATCCATTACCAATAGAGAAGTATGTTGTTACATGATTTCATGEST: gi|110386431|gb|EC951025.1|EC951025
genomic: AAGATTGACAAGCCAGGAGCTTTGTCTAAACCAGAGCTGACAGAGCAAATgtaagtggag ... tgctttgcagGGAGCTTAGATCCATTACCAATAGAGAAGTATGTTGTTACATGATTTCATG
EST: AAGATTGACAAGCCAGGAGCTTTGTCTAAACCAGAGCTGACAGAGCAAAT GGAGCTTAGATCCATTACCAATAGAGAAGTATGTTGTTACATGATTTCATG
genomic: AAGATTGACAAGCCAGGAGCTTTGTCTAAACCAGAGCTGACAGAGCAAATgtaagtggag ... tgctttgcagGGAGCTTAGATCCATTACCAATAGAGAAGTATGTTGTTACATGATTTCATG
ttcatggctattttatttatggtgtttagtgttgagaatggtgcttgctttgcagGGAGCTTAGATCCATTACCAATAGAGAAGTATGTTGTTACATGATTTCATGCAAGAACTCAACCAACATCGATACGGTTATTGACTGGCTTGTAAAGCAT
cttgcttt CT-rich tract
tattttatttatggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatccaatccccttccttttgcttggttgtgatggtttaaggttcatggctattttatttatggtgtttagtgttgagaatggtgcttgctttgcagGGAGCTTAGATCCATTACCAATAGAGAAGTATGTTGTTACATGATTTCATGCAAGAACTCAACCAACATCGATACGGTTATTGACTGGCTTGTAAAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- -aatccaa
- - - - - - cccttcc
- - - - - - - - - - - tgcttgg
- - - - - - - - - - - - - - - -gtgatgg
- - - - - - - - - - - - - - - - - - - - - - - tcatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaatg