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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcgatgaccaaataatctaatttcactactcactcaccctctctctctctctctcacacacacacacacacactcactcacttggggaatggattactaactcgtttttattttcagtagcatgggtagcatttcttatgatgcctctcttattttgttgttttgccttgaagATTGCTGAAGAACTCAGAACAAGTGTTCATGAAGTGACTGGTCTTACATGCAGCGCCGGAGTGGCACCAAACCGCTTACTTGCTAAG

Basic information

species Vitis vinifera
transcript Vv03s0091g00860.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0091g00860.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G45340.1 (Glycine max), 3'ss of exon 4
gtaagttcgatgaccaaataatctaatttcactactcactcaccctctctctctctctctcacacacacacacacacactcactcacttggggaatggattactaactcgtttttattttcagtagcatgggtagcatttcttatgatgcctctctt-attttgttgttttgc--cttgaagATTGCTGAAGAACTCAGAACAAGTGTTCATGAAGTGACTGGTCTTACATGCAGCGCCGGAGTGGCACCAAACCGCTTACTTGCTAAG-------
                                                                                               |   ||      |  |||  |||      |  |||     | |||  | |  | | |||||| |||||||   ||||     || ||||||   ||||||||||| |  ||||| |||||| ||||||||| |||||||| || |||||||||||||| |||||||||||||||       
----------------------------------------------------------------------------------------------gtaagttggcgcatgctttggattagtttaacaatgaaatacctttaatgtattacatctcttgattttgtaaatttggaatatgtagATTGTCCAAGAACTCAGAGCTGGTGTTAATGAAGAGACTGGTCTCACATGCAGTGCTGGAGTGGCACCAAATCGCTTACTTGCTAAGGTTCTGG

upper sequence: Vv03s0091g00860.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G00410.1 (Glycine max), 3'ss of exon 5
gtaagttcgatgaccaaataatctaatttcactactcactcaccctctctctctctctctcacacacacacacacacactcactcacttggggaatggattactaactcgtttttattttcagtagcatgggtagcatttcttatgatgcctctctt-attttgttgttttgc--cttgaagATTGCTGAAGAACTCAGAACAAGTGTTCATGAAGTGACTGGTCTTACATGCAGCGCCGGAGTGGCACCAAACCGCTTACTTGCTAAG
                                                                                               |   ||      |  |||  |||     ||  | |     | |||  | |  |   | |||| |||||||   ||||      | |||||||  ||||||||||| |  | ||| |||||| ||||||||| |||||||| || |||||||||||||| |||||||||||||||
----------------------------------------------------------------------------------------------gtaagttggcgcgtgctttggattaattttacaacgaaagacctttaatgtattagatttcttgattttgtaaatttggaatacgtagATTGCCCAAGAACTCAGAGCTGGGGTTTATGAAGAGACTGGTCTCACATGCAGTGCTGGAGTGGCACCAAATCGCTTACTTGCTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcatgggtagcatttcttatgatgcctctcttattttgttgttttgccttgaagATTGCTGAAGAACTCAGAACAAGTGTTCATGAAGTGACTGGTCTTACATGCAGCGCCGGAGTGGCACCAAACCGCTTACTTGCTAAG
                         cctctcttattttgtt  CT-rich tract
                               ttattttgttgtttt  TA-rich tract