Sequence
atgc intronic sequence ATGC exonic sequencegttacttctttatgtttggaacttgatttctttaagtgtgttagtgattgaatgattgttttactaaaagtgctgaactatgatggttctcagGAATTGGAGGCATTGTCTAATCATTATGCATTATTATTTAACCGAAGAAAAGGAAAATTACCATCTGAGCAAAAGTCTGTTTATGATGGAAAGCTTAAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g01360.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G29660.1 (Glycine max), 3'ss of exon 5
---------gttacttctttatgtttggaacttgattt---ctttaagt-gtgttagtgattgaatgattgttttactaaaagtgctgaactatgatggttctcagGAATTGGAGGCATTGTCTAATCATTATGCATTATTATTTAACCGAAGAAAAGGAAAATTACCATCTGAGCAAAAGTCTGTTTATGATGGAAAGCTTAAAC
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atctccacctaaatccctataaatttaacactttttttatgctttaaattgtgctatt--ttagattttggtttgac--aaattatttca-tatg-cattactcagGAACTGGAGGCTTTGTCTAGTCATTATGCATTGTTATTTAACCGAAGAAAAGCAAAGCTATCAGCTGAGCAAAAGTCTGTATATGATGGGAAGCTTAAAG
upper sequence: Vv03s0063g01360.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA20G01190.1 (Glycine max), 3'ss of exon 7
--------gttacttctttatgtttggaact-----tgatttctttaagtgtgttagtgattgaatgattgttttactaaaagtgctgaactatgatggttctcagGAATTGGAGGCATTGTCTAATCATTATGCATTATTATTTAACCGAAGAAAAGGAAAATTACCATCTGAGCAAAAGTCTGTTTATGATGGAAAGCTTAAAC
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tccacctaaatatccctataatttcaacactatcttttatgcattaaattgtgctatt--ttagattttggtttagc--aaattatttca-tatg-caatactcagGAACTGGAGGCTTTGTCTAGTCATTATGCCTTGTTATTTAACCGAAGAAAAGCAAAGTTATCAGCTGAGCAGAAGTCTGTATATGATGGGAAGCTTAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110414982|gb|EC980849.1|EC980849EST: TGACATTTGATCGATGCTTCTACATATACGGGGGACCAGAGCAATTGGAG GAATTGGAGGCATTGTC
genomic: TGACATTTGATCGATGCTTCTACATATACGGGGGACCAGAGCAATTGGAGgttacttctt ... tggttctcagGAATTGGAGGCATTGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttagtgattgaatgattgttttactaaaagtgctgaactatgatggttctcagGAATTGGAGGCATTGTCTAATCATTATGCATTATTATTTAACCGAAGAAAAGGAAAATTACCATCTGAGCAAAAGTCTGTTTATGATGGAAAGCTTAAAC
tactaaa putative branch site (score: 1)
ttctc putative PPT
attgttttactaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttacttctttatgtttggaacttgatttctttaagtgtgttagtgattgaatgattgttttactaaaagtgctgaactatgatggttctcagGAATTGGAGGCATTGTCTAATCATTATGCATTATTATTTAACCGAAGAAAAGGAAAATTACCATCTGAGCAAAAGTCTGTTTATGATGGAAAGCTTAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA