1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagacaaactacttcaactcaaacctgatctcatccttcagataaaacataatgcgcatcatcattacaaaaaccactgttctcattgtcttactgcagAAACTGGTTGATGTTCTGAACTTTCTTAAAGTTCCACAAAGGGATCTTAGGAGTCGCCAAGTGAAGATACATAAAGGGTCGTTATCTGAACAGGTCGAGA
species | Vitis vinifera |
transcript | Vv03s0063g00840.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCACCAGACACACAATTTTCTACTATGAGGATGTGATAAAAAACCGCACG AAACTGGTTGATGTTCTGAACTTTCTTAAAGTTCCACAAAGGGATCTTAGGEST: gi|71873693|gb|DT022748.1|DT022748
genomic: GCACCAGACACACAATTTTCTACTATGAGGATGTGATAAAAAACCGCACGgtgagacaaa ... cttactgcagAAACTGGTTGATGTTCTGAACTTTCTTAAAGTTCCACAAAGGGATCTTAGG
EST: TCACCAGACACACAATTTTCTACTATGAGGATGTGATAAAAAACCGCACG AAACTGGTTGATGTTCTGAACTTTCTTAAAGTTCCACAAAGGGATCTTAGGEST: gi|110384990|gb|EC949466.1|EC949466
genomic: GCACCAGACACACAATTTTCTACTATGAGGATGTGATAAAAAACCGCACGgtgagacaaa ... cttactgcagAAACTGGTTGATGTTCTGAACTTTCTTAAAGTTCCACAAAGGGATCTTAGG
EST: TCACCAGACACACAATTTTCTACTATGAGGATGTGATAAAAAACCGCACG AAACTGGTTGATGTTCTGAACTTTCTTAAAGTTCCACAAAGGGATCTTAGG
genomic: GCACCAGACACACAATTTTCTACTATGAGGATGTGATAAAAAACCGCACGgtgagacaaa ... cttactgcagAAACTGGTTGATGTTCTGAACTTTCTTAAAGTTCCACAAAGGGATCTTAGG
aaacataatgcgcatcatcattacaaaaaccactgttctcattgtcttactgcagAAACTGGTTGATGTTCTGAACTTTCTTAAAGTTCCACAAAGGGATCTTAGGAGTCGCCAAGTGAAGATACATAAAGGGTCGTTATCTGAACAGGTCGAGA
gtcttac putative branch site (score: 3)
ttgtctt CT-rich tract
attacaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagacaaactacttcaactcaaacctgatctcatccttcagataaaacataatgcgcatcatcattacaaaaaccactgttctcattgtcttactgcagAAACTGGTTGATGTTCTGAACTTTCTTAAAGTTCCACAAAGGGATCTTAGGAGTCGCCAAGTGAAGATACATAAAGGGTCGTTATCTGAACAGGTCGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA