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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggcattttaatatcttaaaactctaagctaattgcatgttctttttggcaatttcaaatttggtaattctagttgtttctatgcagACTCTTGTAACAGGTTTTGCTAGAATTTTTGGACAACCTGTGGGCATAATCGGAAACAATGGGATATTATTTAATGAATCTGCTCTAAAAGGGGCCCATT

Basic information

species Vitis vinifera
transcript Vv03s0063g00290.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0063g00290.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G14860.1 (Glycine max), 3'ss of exon 4
--------gtgagggcattttaatatcttaaaactctaagctaattgcatgttctttttggcaatt-tcaaatttggtaattctagttgtttctatgcagACTCTTGTAACAGGTTTTGCTAGAATTTTTGGACAACCTGTGGGCATAATCGGAAACAATGGGATATTATTTAATGAATCTGCTCTAAAAGGGGCCCATT
           |   ||| |  ||| |   |  ||  |||  ||  |||  | |  ||    |  | |  | | |     || | |   | | | ||||||| ||||| ||||| |||||||||||||||||||| ||||| || || || |||||||||||||| ||||| ||||||||||| || |||||||||||||
aaaatttctacaactcatctatataccagtagcctggaagaaaagcgcagttgcaattccctatctgtttattataaccttttttgaaatctttttgcagACACTTGTGACAGGATTTGCTAGAATTTTTGGACAGCCTGTTGGAATTATTGGAAACAATGGGATTTTATTCAATGAATCTGCACTGAAAGGGGCCCATT

upper sequence: Vv03s0063g00290.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G33620.1 (Glycine max), 3'ss of exon 4
--------gtgagggcattttaatatcttaaaactctaagctaattgcat-gttctttttggcaatttcaaatttggtaattctagttgtttctatgcagACTCTTGTAACAGGTTTTGCTAGAATTTTTGGACAACCTGTGGGCATAATCGGAAACAATGGGATATTATTTAATGAATCTGCTCTAAAAGGGGCCCATT
           |   |   | | |||  |   |  ||     ||  ||   |||    ||   |  |    |||      || | |   | | | ||||||| ||||| ||||| |||||||||||||| ||||| ||||| || || || |||||||||||||| ||||| ||||||||||| || |||||||||||||
ataaaatttctacaactcatcagtatactggtagcctggaagaaaagcgcagttgcaattcctatctgtttattataacctttttgaaatctttttgcagACACTTGTGACAGGATTTGCTAGAATTTTCGGACAGCCTGTTGGAATTATTGGAAACAATGGGATTTTATTCAATGAATCTGCACTGAAAGGGGCCCATT

upper sequence: Vv03s0063g00290.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G34030.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgagggcattttaatatcttaaaactctaagctaattgcatgttctttttggcaatttcaaatttggtaattctagttgtttctatgcagACTCTTGTAACAGGTTTTGCTAGAATTTTTGGACAACCTGTGGGCATAATCGGAAACAATGGGATATTATTTAATGAATCTGCTCTAAAAGGGGCCCATT
|||||   || ||| |  | | |   | ||  | |||   |  || ||      | ||||  || ||| | ||||  |||       |||||| ||||| || |||||||||||||||| ||| ||  | ||||| || ||||| |||||||| ||| | || ||||||||||| |||||||| || || |
gtgagataatgttattcgccttattttgtatccaaatgttaccttttt------actttcttatgtggaacttctttttg-------gcagACGCTTGTGACTGGTTTTGCTAGAATTTATGGTCAGACGGTGGGTATTATCGGGAACAATGGCATACTGTTCAATGAATCTGCACTAAAAGGAGCTCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcatgttctttttggcaatttcaaatttggtaattctagttgtttctatgcagACTCTTGTAACAGGTTTTGCTAGAATTTTTGGACAACCTGTGGGCATAATCGGAAACAATGGGATATTATTTAATGAATCTGCTCTAAAAGGGGCCCATT
                                         ttgtttct  CT-rich tract
                  aatttcaaattt  TA-rich tract