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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatgttgcctttttaagtctccaagtagctaggggcactctgttttttggaggtttatggcttttcatttcattgtaacatttgctactctgttcggtgctcagtctttggaacatttctcttgctgttctgcagGTTGTAAGCATAAAGGCTATTGGAATTGCTATAAAGCTTACTCTGGAGGGGATAAGTCAAGTTGCTTATCCTCAAACTTGGTTTTTCCTTACTGTTGCAG

Basic information

species Vitis vinifera
transcript Vv03s0038g01940.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g01940.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G03390.1 (Glycine max), 3'ss of exon 5
gtaattatgttgcctttttaagtctccaagtagctaggggcactctgttttttggaggtttatggcttttcattt-cattgtaacatttgctactctgttcggtgctcagtctttggaacatttctcttgctgttctgcagGTTGTAAGCATAAAGGCTATTGGAATTGCTATAAAGCTTACTCTGGAGGGGATAAGTCAAGTTGCTTATCCTCAAACTTGGTTTTTCCTTACTGTTGCAG
                             |||  || |     | ||| | |  | | |  |  | ||   |||   |||| |||| |||         |   | ||   |  || | ||||     || |     | |||||||| ||||||||||| ||||||||||| ||||||||||| || || || ||||||||| | ||||||||||| ||||||||||| ||||| || ||  
-----------------------------gtaattatg----ttatgtctatctgtgatgaa--gtttcatattgatattgcaacacttgaactaactgtgtatacttgctactttgtacatgaaattttcaaaatttcagGTTGTGAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACACTTGATGGAATAAGTCAAATAGCTTATCCTCAGACTTGGTTTTTTCTTACCGTGGCCA

upper sequence: Vv03s0038g01940.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G11230.1 (Glycine max), 3'ss of exon 1
gtaattatgttgcctttttaagtctccaagtagctaggggcactctgttttttggaggtttatggcttttcatttcattgtaacatttgctactctgttcggtgctcagtctttggaacatttctcttgctgttctgcagGTTGTAAGCATAAAGGCTATTGGAATTGCTATAAAGCTTACTCTGGAGGGGATAAGTCAAGTTGCTTATCCTCAAACTTGGTTTTTCCTTACTGTTGCAG
                             |||  || |     ||||| | |  | | |  | |  |  || |   |||| ||| ||||         |   | ||   |  || | ||||   | || |  || | |||||||| ||||||||||| ||||||||||| ||||||||||| || || || ||||||||| | | ||||||||| ||||||||||| ||||| || ||  
-----------------------------gtaattatg-----tctgtctgtctgtgatgaa-gtttcatcttgatattgcaacgtttg--gactaactgtatacttgctactttgtacatgaatttttcaatttttcagGTTGTGAGCATAAAGGCCATTGGAATTGCAATAAAGCTTACACTTGATGGAATAAGTCAAATAGTTTATCCTCAGACTTGGTTTTTTCTTACCGTGGCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189643|gb|CF608992.1|CF608992
EST:     CAAATATACTGGTTTACTTGGGCATTTGTTCATTAATGGGTTCACTTACG                         GTTGTAAGCATAAAGGCTATTGGAATTGCTATAAAGCTTACTCTGGAGGGG
genomic: CAAATATACTGGTTTACTTGGGCATTTGTTCATTAATGGGTTCACTTACGgtaattatgt ... tgttctgcagGTTGTAAGCATAAAGGCTATTGGAATTGCTATAAAGCTTACTCTGGAGGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgctactctgttcggtgctcagtctttggaacatttctcttgctgttctgcagGTTGTAAGCATAAAGGCTATTGGAATTGCTATAAAGCTTACTCTGGAGGGGATAAGTCAAGTTGCTTATCCTCAAACTTGGTTTTTCCTTACTGTTGCAG
                                   tttctcttgctgttct  CT-rich tract
                               aacattt  TA-rich tract