Sequence
atgc intronic sequence ATGC exonic sequencegtaatttcatgtgtcgtcttgccttcttttcctttttttactttctgggttgggggaggattggatggtgaggtggtttggggttctgttaccacaacagaatctgtcatttctgtgtataaatattcttcaaatttcttatatctcaattgtatctatagGAGCATTCCAAGTTCTACAACTTGTACGGGAGGCCGGACTGAAAGCTGATTGCAAACTTTATACTACTTTGATATCAACTTGTGCTAAAAGTGGAAAAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g01320.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G03760.1 (Glycine max), 3'ss of exon 5
gtaatttcatgtgtcgtcttgccttcttttcctttttttactttctgggttgggggaggattggatggtgaggtggtttggggttctgttaccacaacagaatctgtcatttctgtgtataaatattcttcaaatttcttatatctcaattgtatctatagGAGCATTCCAAGTTCTACAACTTGTACGGGAGGCCGGACTGAAAGCTGATTGCAAACTTTATACTACTTTGATATCAACTTGTGCTAAAAGTGGAAAAGT
| | ||| | | | | ||| | | | | ||| || || | || | | || | ||||| | | ||| || ||||||||| | || ||| | ||| || |||| || ||||||||||||||||||| ||| |||||| ||||||||| || ||||| |||||
----------------------------------------------------------------------------gtaaatatcctgattaccctctaaaatgttccttctttgt-------catcttttcagttcgtgacatttgtattgtgtattcagGGGCTTTCCAAGTTTTGCAGCTTCTTAAGGATGCTCGACTAGAACCTGATTGCAAACTTTATACCACTCTGATATTAACTTGTGCAAAGAGTGGGAAAGT
upper sequence: Vv03s0038g01320.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G35270.1 (Glycine max), 3'ss of exon 4
gtaatttcatgtgtcgtcttgccttcttttcctttttttactttctgggttgggggaggattggatggtgaggtggtttggggttctgttaccacaacagaatctgtcatttctgtgtataaatattcttcaaatttcttatatctcaattgtatctatagGAGCATTCCAAGTTCTACAACTTGTACGGGAGGCCGGACTGAAAGCTGATTGCAAACTTTATACTACTTTGATATCAACTTGTGCTAAAAGTGGAAAAGT
| | | | | |||||| | | ||| | | | | ||| || || | || | || | ||||| | | ||| || || || ||| | || ||| | ||| || |||| || ||||||||||||||||||| ||| |||||| ||||||||| || ||||| |||||
-----------------------------------------------------------------------gtaaatatcctggttagttacc-ctctaaaatgttccttctttgt-------catcttttcagttcatggcatttgtattgtgtattcagGGGCTTTTCAGGTTTTGCAGCTTCTTAAGGATGCTCGACTAGAACCTGATTGCAAACTTTATACCACTCTGATATTAACTTGTGCAAAGAGTGGGAAAGT
upper sequence: Vv03s0038g01320.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G34830.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaatttcatgtgtcgtcttgccttcttttcctttttttactttctgggttgggggaggattggatggtgaggtggtttggggttctgttaccacaacagaatctgtcatttctgtgtataaatattcttcaaatttcttatatctcaattgtatctatagGAGCATTCCAAGTTCTACAACTTGTACGGGAGGCCGGACTGAAAGCTGATTGCAAACTTTATACTACTTTGATATCAACTTGTGCTAAAAGTGGAAAAGT
| | | || ||| || | | || ||| | | | | | |||||| | | | | | | | | || | | |||||| ||| ||| || |||| ||| ||| ||| ||||||||||||||||| || ||||| ||||||| |||||||||||||||||||||
---------------------------------------------------------------------gtgatatttcatatttccagtattaaatca---ctggtcttattcattttt---tattctcctagatgttgaattgttacttatgt----agGAGCTCGGGGAGTGTTACGTCTGGTACAAGAGAGCGGTATGACTGCTGATTGCAAACTTTACACAACTTTAATATCAAGTTGTGCTAAAAGTGGAAAAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatttctgtgtataaatattcttcaaatttcttatatctcaattgtatctatagGAGCATTCCAAGTTCTACAACTTGTACGGGAGGCCGGACTGAAAGCTGATTGCAAACTTTATACTACTTTGATATCAACTTGTGCTAAAAGTGGAAAAGT
tataaatattcttcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatttcatgtgtcgtcttgccttcttttcctttttttactttctgggttgggggaggattggatggtgaggtggtttggggttctgttaccacaacagaatctgtcatttctgtgtataaatattcttcaaatttcttatatctcaattgtatctatagGAGCATTCCAAGTTCTACAACTTGTACGGGAGGCCGGACTGAAAGCTGATTGCAAACTTTATACTACTTTGATATCAACTTGTGCTAAAAGTGGAAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA