1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaatagacttaaatttacttcaaaatatttatcaaactaaaaatgctttttaaaaacacggtcaatggaactggctaattactgaacttcaagatttcagTCGTATACGTGATGAGCTAGCCGAACAGGGTGCAGAAACTACCAACCTCACCAACAAACTTGATCGT
species | Vitis vinifera |
transcript | Vv03s0038g00510.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGGACAAGATCACTGCAGGCCACCGTCTAGATTTAAATCTCGAAAGAGG TCGTATACGTGATGAGCTAGCCGAACAGGGTGCAGAEST: gi|161715659|gb|FC067789.1|FC067789
genomic: ATGGACAAGATCACTGCAGGCCACCGTCTAGATTTAAATCTCGAAAGAGGgtatgaagca ... aagatttcagTCGTATACGTGATGAGCTAGCCGAACAGGGTGCAGA
EST: ATGGACAAGATCACTGCAGGCCACCGTCTAGATTTAA-TCTCGAAAGAGG TCGTATACGTGATGAGCTAGC
genomic: ATGGACAAGATCACTGCAGGCCACCGTCTAGATTTAAATCTCGAAAGAGGgtatgaagca ... aagatttcagTCGTATACGTGATGAGCTAGC
ctttttaaaaacacggtcaatggaactggctaattactgaacttcaagatttcagTCGTATACGTGATGAGCTAGCCGAACAGGGTGCAGAAACTACCAACCTCACCAACAAACTTGATCGT
ggctaat putative branch site (score: 3)
taaaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatagacttaaatttacttcaaaatatttatcaaactaaaaatgctttttaaaaacacggtcaatggaactggctaattactgaacttcaagatttcagTCGTATACGTGATGAGCTAGCCGAACAGGGTGCAGAAACTACCAACCTCACCAACAAACTTGATCGT
aaataga
- - - - - - - - - - caaaata
- - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatggaa