Sequence
atgc intronic sequence ATGC exonic sequence...acactattatatgcaggaaggaacgagttcatttcagcttgtcctccaaatgcttatattggtaattaaaatgaatgtttttatgtcttacgcttttcagGAAAATATACTCCTCAGTTTATGTGGCTTGAAAAGGAGCTACCAAAAGTTAACAGGAGTGAGACACCATGGCTAATTGTTCTTATGCATTCCCCATGGTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g00250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G01000.1 (Glycine max), 3'ss of exon 5
---acactattatatgcaggaaggaacgagttcat--ttcagcttgtcctccaaatgcttatattggtaattaaaatgaatgtttttatgtcttacgcttttcagGAAAATATACTCCTCAGTTTATGTGGCTTGAAAAGGAGCTACCAAAAGTTAACAGGAGTGAGACACCATGGCTAATTGTTCTTATGCATTCCCCATGGTA
|| ||| ||| || | ||| | | || | | ||| | ||||| | || | | || | | || |||||||||||||| || || | || |||||||||||||||||||| ||||||||||||| ||||| || ||| | |||||||| |||||||| || |||||
gctgttctgttactacttggattaaatgcacacataatctgagatatcatt---gtttttaaagtggtatctcttttgt-tacaataatcttccat-tttctcagGAAAATATACACCACAATATAAATGGCTTGAAAAGGAGCTACCGAAAGTTAACAGGACAGAGACTCCTTGGTTGATTGTTCTCATGCATTCACCTTGGTA
upper sequence: Vv03s0038g00250.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G36360.1 (Glycine max), 3'ss of exon 5
---acactattatatgcaggaaggaacgagttcatttcagcttgtcctccaaatgcttatattggtaattaaaatgaatgtttttatgtcttacgcttttcagGAAAATATACTCCTCAGTTTATGTGGCTTGAAAAGGAGCTACCAAAAGTTAACAGGAGTGAGACACCATGGCTAATTGTTCTTATGCATTCCCCATGGTA
| || ||| ||| || | | | | ||| | | ||| | || || | || | | | || | | || |||||||||||||| || || | || ||||||||| |||||||||| ||||||||||||| ||||| || ||| | |||||||| |||||||| || |||||
ctgccgctgttactgcttggattaaatgcacataatctgtgatatcc-ctgtttttttaaagtgatatctcttttgt-tataataatcttccat-tttctcagGAAAATATACACCACAATATAAATGGCTTGAAGAGGAGCTACCGAAAGTTAACAGGACAGAGACTCCTTGGTTGATTGTTCTGATGCATTCACCTTGGTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccaaatgcttatattggtaattaaaatgaatgtttttatgtcttacgcttttcagGAAAATATACTCCTCAGTTTATGTGGCTTGAAAAGGAGCTACCAAAAGTTAACAGGAGTGAGACACCATGGCTAATTGTTCTTATGCATTCCCCATGGTA
gtcttac putative branch site (score: 3)
cgcttttc CT-rich tract
ttatattggtaattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acactattatatgcaggaaggaacgagttcatttcagcttgtcctccaaatgcttatattggtaattaaaatgaatgtttttatgtcttacgcttttcagGAAAATATACTCCTCAGTTTATGTGGCTTGAAAAGGAGCTACCAAAAGTTAACAGGAGTGAGACACCATGGCTAATTGTTCTTATGCATTCCCCATGGTA
- - - - - - gcaggaa
- - - - - - - - - - - - - - - - - cagcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattaaa