Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgtattcacatctttcttctttaattttattttattttttccatatgtttcactactgtggtgcactaaacatttgagcatacggtcaggtttgacacgaacccgttgaatttaccaaaaatgctactggtcaatgtgaaggatttttgatatctcgtagctgattaattgtttcagGGAAGTACACTCCTCAATATGAATGGCTCCAACAGGAGCTACCCAAAGTTAACAGGACAGAGACACCATGGTTGATTGTTCTTGTGCATTCCCCATGGTA

Basic information

species Vitis vinifera
transcript Vv03s0038g00220.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g00220.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G34960.1 (Glycine max), 3'ss of exon 5
--gcaagtgtattcacatctttcttctttaattttattttattttttccatatgtttcactactgtggtgcactaaacatttgagcatacggtcaggtttgacacgaacccgttgaatttaccaaaaatgctactggtcaatgtgaaggatttttgatatctcgtagctgattaattgtttcagGGAAGTACACTCCTCAATATGAATGGCTCCAACAGGAGCTACCCAAAGTTAACAGGACAGAGACACCATGGTTGATTGTTCTTGTGCATTCCCCATGGTA
     | |  || |||   ||| |   ||||  |||  ||||  | |  |   ||||  ||          |  | |   |||  ||||   |||    |||  ||   || ||  ||||  || | || |  ||  |       ||  ||  ||  |  || ||               ||||| || || ||||| ||||||||||||||  |    |||||||| || ||| | || ||  |||| || ||||||||||||||||||||||| ||||||||
gtaatattagatgcaccattttttctcttaacattaccttataatcttaaa--gttttgctg---------aaaagattattgttcata-attcaaagctgaatcgcttcc-ttatatttttcatatatacaccttttttgcactaaacatcatt--ttccttgt---------------tcagGCAAATATACTCCCCAATATGAATGGCTTGAGGCAGAGCTACCAAAGGTTGATAGAACCAAGACCCCTTGGTTGATTGTTCTTGTGCATTCTCCATGGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctactggtcaatgtgaaggatttttgatatctcgtagctgattaattgtttcagGGAAGTACACTCCTCAATATGAATGGCTCCAACAGGAGCTACCCAAAGTTAACAGGACAGAGACACCATGGTTGATTGTTCTTGTGCATTCCCCATGGTA
                                        gattaat  putative branch site (score: 3)
                                              ttgtttc  CT-rich tract
                    atttttgatat  TA-rich tract