Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgaaattcatgtgatgcttaaaagtattatttcagtattttgctttttaaaagactaaagacagaagattgatatggtttcatcactgtgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGACTCTGCAGAGGAAGCGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGC

Basic information

species Vitis vinifera
transcript Vv03s0017g01350.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 5
-actgaaatt--catgtgatgcttaaaagtattatttcagtattttgctttttaaaagactaaagacagaagattgatatggtttcatcactgtgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGACTCTGCAGAGGAAGCGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGC
  |||   ||   || || ||  |   | | ||      | |   |  | ||   |||  |    ||   ||    |  |    |  |  || |  |  ||||| |||||    || || || |||||||| ||| |||| |||||||| ||||| || |||||||||||||| || ||||| || ||||||||||| || ||
ctctgtgtttgttatttgttggatgggattgttgacaatgaaccatagtgttctgaagttttgcaaccacag--caagctaacctgtttgct-tccttttcagGCAAGAAGGTGAGCAAGGCACCTAAGATCCAGCGGCTTGTGACCCCCTTGACCCTCCAGAGGAAGCGTGCTAGAATTGCTGACAAGAAGAAGAGGATCGC

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 6
actgaaattcatgtgatgct----taaaagtattatttcagtattttgctttttaaaagactaaagacagaagat--tgatatg-gtttcatcactgtgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGACTCTGCAGAGGAAGCGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGC
      ||| |||   |  |    |  | |    |||  || |  ||  ||||  | | || ||        | |  | || || ||| |||   | || |     || || |  || || ||||| || ||||| ||  | ||||| || ||  |||| || || || ||| | |||||||||||||| |||||||||||||||||
------atttatgctgttttttgatggaggacccattgaaggagattatttttggatatacaaattgtgatggtttctaatctgagttacatatgtttggttgcagGGAAAAAGGTG-AGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGACCCTCCAAAGAAAGAGGGCAAGGATTGCAGATAAGAAGAAGAGAATTGC

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 5
-actgaaattcatgtgatgcttaaaagtattatttcagtattttgctttttaaaagactaaagacagaagattgatatggtttcatcactgtgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGACTCTGCAGAGGAAGCGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGC
 | | |   |  |||         | |    |||  || |  ||  ||||  | |   |   ||       | |     ||| |||   | || |  |  || || |  || || ||||| |||||||| ||  ||||||| || ||  |||| || || || ||| | |||||||||||||| |||||||||||||||||
tatttatgctgttgtttgatgggtaggacccattgaaggagattatttttggacatgattgtgatgatttctagtctgagttacatatgtttggttgtagGGAAAAAGGTG-AGCAAAGCTCCTAAGATACAACGGCTGGTCACTCCCCTGACCCTCCAAAGAAAGAGGGCAAGGATTGCAGATAAGAAGAAGAGAATTGC

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G09330.1 (Glycine max), 3'ss of exon 3
actgaaattcatgtgatgcttaaaagtattatttcagtattttgctttttaaaagactaaagacagaagattgata-tggtttcatcactgtgatcct-----cagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGACTCTGCAGAGGAAGCGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGC
 ||  |||  ||   ||   | |   |     |||| |||      ||  ||  |  | |   || |  ||  ||  | || |||  | ||   |  |     ||||||| ||    || ||||| || ||||||||| | || || || ||| |||| ||||| |||||||| ||||| ||||| || |||||||||||||| ||
-ctttaatcaat---atatgtgatgtttcctcttcaatatccaa--ttaaaatcggatcagttcatattatgaattctagtctcagtaatggatttttggttgcagGGAAAAAGGTAAGCAAAGCTCCAAAGATTCAGCGACTCGTCACTCCACTGACACTGCAAAGGAAGCGGGCAAGAATTGCTGATAAGAAGAAGAGAATCGC

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 5
actgaaattcatgtgatgcttaaaagtattatttcagtatt---ttgctttttaaaagactaaagacagaagattgatatggtttcatcactgtgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGACTCTGCAGAGGAAGCGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGC
    |  || |    |   |||       | | |    ||    ||  |||    | || ||  |    |  || | | ||  |     |   |  |   ||||||| |||   || ||||| || ||||||||  |  |||| || || ||||| || || ||||| || ||||||||||| || |||||||||||||||||
--acacttttactcaacatttatggactctttgtggacatccaattaatttggtcatgattagtggtgaattatag-tctgagtaatgaataattgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGATTGGTCACTCCTTTGACACTCCAAAGGAAACGAGCAAGGATTGCCGACAAGAAGAAGAGAATTGC

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 4
actgaaattcatgtgatgcttaaaagtattatttcagtattttgctttttaaaagactaaagacagaagattgat-atggtttcatcactg-----tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGACTCTGCAGAGGAAGCGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGC
    |  || |    |   |||       |   |    ||        |||||      | ||    ||||  || || || | |  | ||     |  |   ||||||| |||   || ||||| || ||||||||  | || || || || ||||| || || ||||| || ||||||||||| || |||||||||||||||||
--acacttttactcaacatttatggactcttcatggacatccaa----ttaaattggccatgatttgagatgaattatagtctgagtaatgaatacttgtttgcagGGAAAAAAGTGAGCAAAGCTCCAAAGATTCAACGACTAGTCACTCCTTTGACACTCCAAAGGAAACGAGCAAGGATTGCCGACAAGAAGAAGAGAATTGC

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 5
actgaaattcatgtgatgcttaaaagtatta-tttcagtattttgctttttaaaagactaaagacagaagattgatatggtttcatcactgtgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGACTCTGCAGAGGAAGCGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGC
  ||| |  |   |||   | | || || |  |||| | ||    |||   |||  | |     | |||  ||| |    ||   |     |  |   |||| ||| ||   || |||||||||||||| |||||||| ||||||||||||||||| ||||||||| | || || ||||| || |||||||||| ||||||
-gtgagacac---tgaacttgagaaatagtggtttctgaatcacacttgagaaataa-tgttttctgaaacttgtttc--ttctgtttggatttttgacagGCAAGGAAGTTAGCAAAGCCCCTAAGATCCAGAGGCTTGTGACCCCATTGACTCTTCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAGAAGAAAATTGC

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 5
-actgaaattcatgtgatgcttaaaagtattatttcagtattttgctttttaaaagactaaagacagaagattgatatggtttcatcactgtgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGACTCTGCAGAGGAAGCGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGC
    |||| | |  |    ||||||   || |||  |        || |||| | || | | ||   |  | | |||||       || ||||     |||| |||||    || || || |||||||| |||||||| ||||| |||||||| || ||||||||| | || || ||||| || |||||||||||||| ||
gtaagaaaattagatt-cacttaaagagataattgaaa------actgtttatacgattgatgatttactaat-atatgaggcttcca-tgtg-----cagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTGACTCCATTGACCCTCCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAGAAGAGAATCGC

upper sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G10360.2 (Arabidopsis thaliana), 3'ss of exon 5
actgaaattcatgtgatgcttaaaagtattatttcagtattttgctttttaaaa---gacta-aagacagaagattgatatggtttcatcactgtgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGACTCTGCAGAGGAAGCGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGC
    | |  || |    |    ||| |   |||    ||    | |  || |||   |  || | ||  || |||| |      |      ||   ||   |||| |||||    || || || |||||||| |||||||| ||||| |||||||| || ||||||||| | || || ||||| || |||||||||||||| ||
----acaaacaagaagggtaagaaaattagattcacttaaagagataattgaaaactgtttatacgattgatgatttactaatatatgaggcttccatgtgcagGCAAGAAGGTTAGCAAGGCTCCTAAGATCCAGAGGCTTGTGACTCCATTGACCCTCCAGAGGAAGAGAGCTAGAATTGCTGACAAGAAGAAGAGAATCGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351041278|gb|FQ447405.1|FQ447405
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110689087|gb|EE065003.1|EE065003
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110365885|gb|EC929406.1|EC929406
EST:     CGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: CGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110709928|gb|EE085815.1|EE085815
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTANAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110416366|gb|EC982343.1|EC982343
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACTACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|30254132|gb|CB971147.1|CB971147
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|33407319|gb|CF212946.1|CF212946
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|30303751|gb|CB980545.1|CB980545
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110396590|gb|EC962282.1|EC962282
EST:     CGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: CGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|22011221|gb|BQ796255.1|BQ796255
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110686550|gb|EE064318.1|EE064318
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110372520|gb|EC936696.1|EC936696
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|34549826|gb|CF518058.1|CF518058
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|22010973|gb|BQ796007.1|BQ796007
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110703116|gb|EE079679.1|EE079679
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110692010|gb|EE070768.1|EE070768
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110686044|gb|EE063293.1|EE063293
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|30131348|gb|CB916687.1|CB916687
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|161714863|gb|FC063014.1|FC063014
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCATTATAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|30303557|gb|CB980351.1|CB980351
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110690121|gb|EE066941.1|EE066941
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|77584224|gb|DV221176.1|DV221176
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110703874|gb|EE081192.1|EE081192
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACTACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110687325|gb|EE064639.1|EE064639
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTANAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|351031319|gb|FQ445344.1|FQ445344
EST:     TGTTCGGAAGTATGTCAACACATATCGTCCAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAACCCCTAAAATTCATAGGCT
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCT
EST: gi|33406716|gb|CF212343.1|CF212343
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|349818266|gb|FQ409041.1|FQ409041
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAAAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|71872051|gb|DT021106.1|DT021106
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110686489|gb|EE064185.1|EE064185
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|351043763|gb|FQ431315.1|FQ431315
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110705320|gb|EE082057.1|EE082057
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAAATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|77582325|gb|DV220132.1|DV220132
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|32460810|gb|CD801984.1|CD801984
EST:     TTCGGAAGTATATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TTCGGAAG--TATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110702349|gb|EE080961.1|EE080961
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|33406814|gb|CF212441.1|CF212441
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|33407808|gb|CF213435.1|CF213435
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110394889|gb|EC960281.1|EC960281
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110702473|gb|EE081229.1|EE081229
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110687004|gb|EE064045.1|EE064045
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110695508|gb|EE073605.1|EE073605
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110689843|gb|EE066424.1|EE066424
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTANAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|33407688|gb|CF213315.1|CF213315
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTGATGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110376798|gb|EC941874.1|EC941874
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|349814419|gb|FQ398859.1|FQ398859
EST:     TGTTCGGAAGCATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAATAAAGCCCCTAAGATTCAGAGGTTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|30296264|gb|CB973058.1|CB973058
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|34362861|gb|CF404446.1|CF404446
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|34543567|gb|CF511799.1|CF511799
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110391390|gb|EC956361.1|EC956361
EST:     CGGAAGTATGTCAACACATATCGTCGAACCTTCACTACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: CGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110387508|gb|EC952179.1|EC952179
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110366273|gb|EC930077.1|EC930077
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110686570|gb|EE064362.1|EE064362
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|71865483|gb|DT014538.1|DT014538
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|352798903|gb|FQ480752.1|FQ480752
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|351022641|gb|FQ428550.1|FQ428550
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|349818085|gb|FQ408860.1|FQ408860
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110730438|gb|EE107514.1|EE107514
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|30135834|gb|CB921172.1|CB921172
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|349812997|gb|FQ411237.1|FQ411237
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|349831058|gb|FQ420728.1|FQ420728
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110687107|gb|EE064226.1|EE064226
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110386393|gb|EC950986.1|EC950986
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|351012895|gb|FQ430458.1|FQ430458
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|352793839|gb|FQ481993.1|FQ481993
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|349823129|gb|FQ400108.1|FQ400108
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|33407408|gb|CF213035.1|CF213035
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACGATATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110708752|gb|EE086649.1|EE086649
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTANAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110692741|gb|EE068362.1|EE068362
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTANAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110369059|gb|EC933202.1|EC933202
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110732397|gb|EE107650.1|EE107650
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATACAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|351021777|gb|FQ437162.1|FQ437162
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110707350|gb|EE083672.1|EE083672
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110689801|gb|EE066341.1|EE066341
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTANAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|34543482|gb|CF511714.1|CF511714
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110362869|gb|EC926427.1|EC926427
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|110730182|gb|EE106970.1|EE106970
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACTACAAAATCTG                         GGAAGAAATGCAGTANAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
EST: gi|351046234|gb|FQ442612.1|FQ442612
EST:     TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTG                         GGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA
genomic: TGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGgtacaattcc ... tgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttaaaagactaaagacagaagattgatatggtttcatcactgtgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGACTCTGCAGAGGAAGCGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGC
                                                tcctc  CT-rich tract
                        attgatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actgaaattcatgtgatgcttaaaagtattatttcagtattttgctttttaaaagactaaagacagaagattgatatggtttcatcactgtgatcctcagGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGACTCTGCAGAGGAAGCGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - -catgtga
- - - - - - - - - - -aaaagta
- - - - - - - - - - - - - - - - - - - - - - - - - aaaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcact