Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaagagaaaacaaaatgattgaatgatattgtgggtagcgttttaataatggttttccagcacccaatctaatgatgtgaacaatatttttgggatcaataattggacagGTTGCTCCAAAGCCCAATACATTTATGCCATTTGGAAATGGGGTCCACTCATGCCCTGGGAATGAGTTGGCCAAACTAGAGATTTTGGTGCTTCTACATC

Basic information

species Vitis vinifera
transcript Vv02s0087g00710.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G14310.1 (Glycine max), 3'ss of exon 5
----gtaaaaagagaaaacaaaatgattgaatgatattgtgggt--agcgttttaataatggttttccagcacccaatctaat----gatgtgaacaatatttttgggatcaataattggacagGTTGCTCCAAAGCCCAATACATTTATGCCATTTGGAAATGGGGTCCACTCATGCCCTGGGAATGAGTTGGCCAAACTAGAGATTTTGGTGCTTCTACATC
     ||| |   | |      |   | | ||  | || |   |  |   || ||   ||    | ||  ||   | |||||      |  | |||||  ||| |   ||   || || |  ||||||||||||| |||||||| ||||||||||||||  |||||| |||  |||| ||||| ||||| || ||| |  | ||||||||||||||||||||||
gtgcataacatatgcatttcctactttcgtattttttttttaatttacttttctatccatatcatacctacatg-attctaagcccaaactttaacaaattttattaaat---tattttgctagGTTGCTCCAAAACCCAATACCTTTATGCCATTTGGCGATGGGGCCCATGCATGTCCTGGCAATGAATTAGCCCAGTTGGAGATTTTGGTGCTTCTACATC

upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G20490.1 (Glycine max), 3'ss of exon 5
-------gtaaaaagagaaaacaaaatgattgaatg-----atattgtgggtagcgttttaataatggttttccagcac----ccaatctaatgatgtgaacaatatttttgggatcaataattggacagGTTGCTCCAAAGCCCAATACATTTATGCCATTTGGAAATGGGGTCCACTCATGCCCTGGGAATGAGTTGGCCAAACTAGAGATTTTGGTGCTTCTACATC
        | |  |||    |   |||  ||   |      || || |   ||   |  || | ||    | ||  |      |  | || |   | | ||||   | | |   || |||  || |  ||||||||| ||| |||||||| |||||||||||||| ||||||  |||  |||| ||||| ||||| || || ||  | |||||||||||| |||||||||
gtaattatttagcagaagttatgcaatccttactttcctttattttttatatactttactattcatatcatacctacgtgtttctgagctcagactcttaacagattctgttaaat-aat--tttgctagGTTGCTCTAAAACCCAATACTTTTATGCCATTTGGCAATGGGACCCATGCATGTCCTGGCAATGAATTAGCTAAGTTGGAGATTTTGGTGTTTCTACATC

upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G08340.1 (Glycine max), 3'ss of exon 5
--------------gtaaaaagagaaaacaaaatgattgaatgatattgtgggtagcgttttaataatggttttccagcac----ccaatctaatgatgtgaacaatatttttgggatcaataattggacagGTTGCTCCAAAGCCCAATACATTTATGCCATTTGGAAATGGGGTCCACTCATGCCCTGGGAATGAGTTGGCCAAACTAGAGATTTTGGTGCTTCTACATC
              | | | |   ||  |  | |  ||   | || || |   ||   |  || | ||    ||||  |      | || || |   |   ||||   | | |   || | ||       ||||||||||||| |||||||| |||||||||||||| ||||||   |   |||| ||||| ||||| || |||||  | |||||||||||| || ||||||
gtatttattgtgcagaacatatgcaatccttattttttttttaattttttatttactttgctattcatatcattcctacgtgtttctaagctcagacttctaacagattctgttaaattattatgctagtagGTTGCTCCAAAACCCAATACTTTTATGCCATTTGGCAATGGGACACGTGCATGTCCTGGCAATGAATTAGCCAACTTGGAGATTTTGGTGTTTTTACATC

upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G35660.2 (Glycine max), 3'ss of exon 4
gtaaaaagagaaaacaaaatgattgaatgatattgtgggtagcgttttaataatggttttccagcacccaatctaatgatgtgaacaatatttttgggatcaataattggacagGTTGCTCCAAAGCCCAATACATTTATGCCATTTGGAAATGGGGTCCACTCATGCCCTGGGAATGAGTTGGCCAAACTAGAGATTTTGGTGCTTCTACATC
||||  |  |     |||     |      ||        ||  || |    ||   | |     ||| | || || ||  |  |||  ||| |   | | ||| ||| | |||| ||||||||||||||| || |||||||||||||| | |||| |||||   || || |||||||| || |||||  | ||||||||||| || |||||||
gtaattattgtgctgaaaccatgttttacctaccaacctcagttttgttgctattcatgtgtgataccaagtccaa-gaccttgacag-attct---gtttaattatttgccagGCTGCTCCAAAGCCCAACACTTTTATGCCATTTGGCAGTGGGATCCACATGTGTCCAGGGAATGAATTAGCCAAGTTGGAGATTTTGGTCCTCCTACATC

upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G19230.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaaaaagagaaaacaaaatgattgaatgatattgtgggtagcgttttaataatggttttccagcacccaa-tctaatgatgtgaacaatatttttgggatcaataattggacagGTTGCTCCAAAGCCCAATACATTTATGCCATTTGGAAATGGGGTCCACTCATGCCCTGGGAATGAGTTGGCCAAACTAGAGATTTTGGTGCTTCTACATC
                   | |||  || || |  | | |||  || || || || ||||   |      | | | ||| | |    || ||  || || |   ||||   | |||| |||||||| |||||||| || ||||||||||| |||||   |||||| || ||||| ||||| || ||||| || ||||| |   |  |  | ||||
------------------gtaatt--atcatttgtttgatagt-ttgtagtactgtttttaatgttttggagtatgatgttatatttaacatgatttgg-ttgctaat---atagGTGGCTCCAAAACCCAATACGTTCATGCCATTTGGCAATGGAACCCACTCGTGTCCTGGAAATGAATTAGCCAAGCTTGAGATGTCTATTATGATTCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccagcacccaatctaatgatgtgaacaatatttttgggatcaataattggacagGTTGCTCCAAAGCCCAATACATTTATGCCATTTGGAAATGGGGTCCACTCATGCCCTGGGAATGAGTTGGCCAAACTAGAGATTTTGGTGCTTCTACATC
           atctaat  putative branch site (score: 3)
                      tgaacaatattttt  TA-rich tract