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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttttgctctaaagactataacattgtcttcaagaagagtttccaaacaaggtcttatttttcgacatttttgacacattctgtgttggtctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAGGATCTTATGGCAAAAGGAATGAAAAATGCTGCAAAT

Basic information

species Vitis vinifera
transcript Vv02s0087g00400.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110719772|gb|EE095190.1|EE095190
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTANAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGGTTCTTGCTGTCATTGAA
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|22010091|gb|BQ795125.1|BQ795125
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|352768101|gb|FQ467240.1|FQ467240
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACCTAATCTTCACTACGGAGGAACCCGGGGTGTTTCTTTGCTGTCATT
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGAC-TAATCTTCACTACAGAGGAGCCCGGG-TGTTTCTT-GCTGTCATT
EST: gi|37184707|gb|CF604061.1|CF604061
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|110698014|gb|EE075544.1|EE075544
EST:     GGTAGTGCGAGGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AGGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|110375405|gb|EC940389.1|EC940389
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|110685994|gb|EE063201.1|EE063201
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|110687331|gb|EE064646.1|EE064646
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|110701053|gb|EE078256.1|EE078256
EST:     GGTACTGCGATGGGGCCTCCTTTACAGGCGATGTAAAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|28968205|gb|CB347238.1|CB347238
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|30322666|gb|CD005928.1|CD005928
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGA
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGA
EST: gi|110698866|gb|EE076852.1|EE076852
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|33410293|gb|CF215920.1|CF215920
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|352782414|gb|FQ470317.1|FQ470317
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|352767915|gb|FQ466124.1|FQ466124
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACCGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|110720782|gb|EE097004.1|EE097004
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|110701134|gb|EE078400.1|EE078400
EST:     GGTACTGCGATGGGGCCTCCTTTACAGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|30322537|gb|CD005799.1|CD005799
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|110728091|gb|EE103366.1|EE103366
EST:     GGTACTGCGATGGGGCCTCCTTTACAGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGAAGCCCGGGGTGTTTCTTGCTGTCATTGA
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGG-TGTTTCTTGCTGTCATTGA
EST: gi|352764078|gb|FQ467648.1|FQ467648
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|110698827|gb|EE076773.1|EE076773
EST:     GGTACTGCGATGGGGCCTCCTTTACAGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|352781577|gb|FQ468875.1|FQ468875
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|110698396|gb|EE075846.1|EE075846
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|110710999|gb|EE087696.1|EE087696
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAN
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|32458466|gb|CD799640.1|CD799640
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|33408383|gb|CF214010.1|CF214010
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGTAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|294964094|gb|GW837897.1|GW837897
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|161714707|gb|FC062675.1|FC062675
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGTAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|110698242|gb|EE075557.1|EE075557
EST:     GGTACTGCGATGGGGCCTCCTTTACAGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|110730159|gb|EE106923.1|EE106923
EST:     GGTACTGCGATGGGGCCTCCTTTACAGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|18458990|gb|BM437268.1|BM437268
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|34548179|gb|CF516411.1|CF516411
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|110690730|gb|EE068155.1|EE068155
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
EST: gi|352778255|gb|FQ465565.1|FQ465565
EST:     GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCT                         AAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG
genomic: GGTACTGCGATGGGGCCTCCTTTACGGGCGATGTAGAAGCAGTTGATCCTgtaagtaatc ... tctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacaaggtcttatttttcgacatttttgacacattctgtgttggtctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAGGATCTTATGGCAAAAGGAATGAAAAATGCTGCAAAT
                        ttttgac  putative branch site (score: 3)
                                             tctttttc  putative PPT
        tcttattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttttgctctaaagactataacattgtcttcaagaagagtttccaaacaaggtcttatttttcgacatttttgacacattctgtgttggtctttttcagAAGACTAATCTTCACTACAGAGGAGCCCGGGTGTTTCTTGCTGTCATTGAGGATCTTATGGCAAAAGGAATGAAAAATGCTGCAAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - -aaagacta
- - - - - - - - - - - cattgtc
- - - - - - - - - - - - - - - - aagaaga
- - - - - - - - - - - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgttgg