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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctctctctacaagcataaatgtagaaatttttatcttcactgccacatataaatctgcctgcagctttgcatcattattgtacagaatttgaaaccatggtttatttttattgtgtttgttctttttgggggagttaggttaggaccccaagttcagaacgttttcaaactttatcttttgagtatgacagGTAGAAGAGGAGACTGGTATACACTTAAATCTACAAGACATGGTTGACCTCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCG

Basic information

species Vitis vinifera
transcript Vv02s0025g04840.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26258628|gb|CA809691.1|CA809691
EST:     GAATGTTGGAAAATGACAGAGGTGATTTTATCGGCACAGCAGCTCGTGAG                         GTAGAAGAGGAGACTGGTATACACTTAAATCTACAAGACACGGTTGACCTC
genomic: GAATGTTGGAAAATGACAGAGGTGATTTTATTGGCACAGCAGCTCGTGAGgtatctctct ... agtatgacagGTAGAAGAGGAGACTGGTATACACTTAAATCTACAAGACATGGTTGACCTC
EST: gi|110391337|gb|EC956303.1|EC956303
EST:     GAATGTTGGAAAATGACAGAGGTGATTTTATTGGCACAGCAGCTCGTGAG                         GTAGAAGAGGAGACTGGTATACACTTAAATCTACAAGACATGGTTGACCTC
genomic: GAATGTTGGAAAATGACAGAGGTGATTTTATTGGCACAGCAGCTCGTGAGgtatctctct ... agtatgacagGTAGAAGAGGAGACTGGTATACACTTAAATCTACAAGACATGGTTGACCTC
EST: gi|22011545|gb|BQ796579.1|BQ796579
EST:     GAATGTTGGAAAATGACAGAGGTGATTTTATTGGCACAGCAGCTCGTGAG                         GTAGAAGAGGAGACTGGTATACACTTAAATCTACAAGACATGGTTGACCTC
genomic: GAATGTTGGAAAATGACAGAGGTGATTTTATTGGCACAGCAGCTCGTGAGgtatctctct ... agtatgacagGTAGAAGAGGAGACTGGTATACACTTAAATCTACAAGACATGGTTGACCTC
EST: gi|34546915|gb|CF515147.1|CF515147
EST:     GAATGTTGGAAAATGACAGAGGTGATTTTATTGGCACAGCAGCTCGTGAG                         GTAGAAGAGGAGACTGGTATACACTTAAATCTACAAGACATGGTTGACCTC
genomic: GAATGTTGGAAAATGACAGAGGTGATTTTATTGGCACAGCAGCTCGTGAGgtatctctct ... agtatgacagGTAGAAGAGGAGACTGGTATACACTTAAATCTACAAGACATGGTTGACCTC
EST: gi|110422883|gb|EC989216.1|EC989216
EST:     GAATGTTGGAAAATGACAGAGGTGATTTTATTGGCACAGCAGCTCGTGAG                         GTAGAAGAGGAGACTGGTATACACTTAAATCTACAAGACATGGTTGACCTC
genomic: GAATGTTGGAAAATGACAGAGGTGATTTTATTGGCACAGCAGCTCGTGAGgtatctctct ... agtatgacagGTAGAAGAGGAGACTGGTATACACTTAAATCTACAAGACATGGTTGACCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggttaggaccccaagttcagaacgttttcaaactttatcttttgagtatgacagGTAGAAGAGGAGACTGGTATACACTTAAATCTACAAGACATGGTTGACCTCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCG
                         ttttcaaactttat  TA-rich tract