Sequence
atgc intronic sequence ATGC exonic sequencegtatgaatgtgaaaaatagttccaagacatgcataatgatcattctcaatctgttaaatatcatgtcctcattccacagGCTTCGGGCCATACCGTGGCAATGGTTGGAGATGGCATCAACGATTCTCCAGCCCTTGTAGCTGCAAATGTTGGAATGGCAATTGGTGCAGGCACAGACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os04g46940.1 (Oryza sativa), 3'ss of exon 5
----------gtatgaatgtgaaaaatagttccaagacatgcataatg-atcattctcaatctgttaaat-------atcatgtcctcattccacagGCTTCGGGCCATACCGTGGCAATGGTTGGAGATGGCATCAACGATTCTCCAGCCCTTGTAGCTGCAAATGTTGGAATGGCAATTGGTGCAGGCACAGACA
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gtgagctatcataaaatcttttgcactgtctcctggtcttttttcccgtaccgttatttggttattcacaccctccgatttttttttactcttgcagTCGGCCGGAAGGACCGTGGCAATGGTTGGTGATGGAATCAACGATTCTCCAGCGCTTGTATCAGCCGACGTTGGCCTGGCGATTGGCGCAGGCACTGACG
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G42800.1 (Glycine max), 3'ss of exon 5
--------------------------------------gtatga-atgtga-aaaatagttccaagacatgcata-atgatcattct--caatctgttaaatatcatgtcctcattccacagGCTTCGGGCCATACCGTGGCAATGGTTGGAGATGGCATCAACGATTCTCCAGCCCTTGTAGCTGCAAATGTTGGAATGGCAATTGGTGCAGGCACAGACA
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gtataacaaaatcaaatgatgacatattgatatttttcttaaaatatgtaacaaaattttattaaaatatgcacgtgtgattagttgaataatgtttcaagtgacatatatataatg-gcagAGTTCTGGGTACACGGTGGCAATGGTGGGAGATGGAATAAACGATTCACCAGCACTAGTGGCTGCTGATGTAGGAATGGCAATTGGTGCTGGCACAGACA
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G37920.1 (Glycine max), 3'ss of exon 3
----------------------------------------------------------------------------------gtatgaatgtgaaaaatagttc-caagacatgcataatgatcattctcaatctgttaaatatcatgtcctcattccac---agGCTTCGGGCCATACCGTGGCAATGGTTGGAGATGGCATCAACGATTCTCCAGCCCTTGTAGCTGCAAATGTTGGAATGGCAATTGGTGCAGGCACAGACA---
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gtatagaaaacgtgtgtcgttcaatcttcatccaatcataagcaaaattctgattagatgtctaatattttacactgaaagtgtatataaattaaactcagtttatactacatctctaacatatattacatgtggttaacatattgagtacccttttcttgttagGCTTCTGG--GTACAGGGGCA-TGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACATTG
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G32190.1 (Glycine max), 3'ss of exon 6
---------------gtatgaatgtgaaaaatagttccaa---gacatgcataatgatcattctcaatctgttaaatatcatgt---cctcattccacagGCTTCGGGCCATACCGTGGCAATGGTTGGAGATGGCATCAACGATTCTCCAGCCCTTGTAGCTGCAAATGTTGGAATGGCAATTGGTGCAGGCACAGACA
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ttttacactgaaagtgtatataaattaaactcatacttaatcctacatctctaacatatattacctgtggttaacatattgagtaccctttttttgttagGCTTCTGGGTGCAGGGTGGCTATGGTGGGGGATGGTATCAATGACTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACA
upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G01680.1 (Glycine max), 3'ss of exon 7
---------------gtatgaatgtgaaaaatagttccaa---gacatgcataatgatcattctcaatctgttaaatatcatgt---cctcattccacagGCTTCGGGCCATACCGTGGCAATGGTTGGAGATGGCATCAACGATTCTCCAGCCCTTGTAGCTGCAAATGTTGGAATGGCAATTGGTGCAGGCACAGACA
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ttttacactgaaagtgtatataaattaaactcatacttaatcctacatctctaacatatattacctgtggttaacatattgagtaccctttttttgttagGCTTCTGGGTACAGGGTGGCTATGGTGGGGGATGGTATCAATGACTCGCCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agacatgcataatgatcattctcaatctgttaaatatcatgtcctcattccacagGCTTCGGGCCATACCGTGGCAATGGTTGGAGATGGCATCAACGATTCTCCAGCCCTTGTAGCTGCAAATGTTGGAATGGCAATTGGTGCAGGCACAGACA
tcctcattcc CT-rich tract
aatctgttaaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgaatgtgaaaaatagttccaagacatgcataatgatcattctcaatctgttaaatatcatgtcctcattccacagGCTTCGGGCCATACCGTGGCAATGGTTGGAGATGGCATCAACGATTCTCCAGCCCTTGTAGCTGCAAATGTTGGAATGGCAATTGGTGCAGGCACAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC