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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttctctagtagatatgctggaaacttgctggttttgaagaaaaaaactggttttttttttttttttttggcaccttcttgcacagttaaaggacaaattataaacttaccagtgctatttggcagGAAATTTCGCTCCTCAGTCGCTTACGTCATCCAAATATAGTGCAATACTATGGATCTGAGACA

Basic information

species Vitis vinifera
transcript Vv02s0025g03370.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G175504_T01 (Zea mays), 3'ss of exon 3
gtaagttttctctagtagatatgctggaaacttgctggttttgaagaaaaaaactggttttttttttttttttttggcaccttcttgcacagttaaaggacaaattataaacttaccagtgctatttggcagGAAATTTCGCTCCTCAGTCGCTTACGTCATCCAAATATAGTGCAATACTATGGATCTGAGACA
||| ||| | ||    |||| || ||   ||   |||          |||||  | |||| |    | | ||| | |     | || |    |           || ||   || ||  | |  |||  |||||||| || ||| | ||||||||||| ||||||||||| || |||||||||||||| || |  
gtatgttatttc----agatgtgttgtgcaccacctgc---------aaaaatttagtttataagctgtgtttattg-----ttttacgttatc----------ttttatctttgccctttccgtttaacagGAAATATCACTCTTGAGTCGCTTACGACATCCAAATATTGTACAATACTATGGATCAGAAATG

upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G42960.1 (Glycine max), 3'ss of exon 3
gtaagttttctctagtagatatgctggaaacttgctggttttgaagaaaaaaactggttttttttttttttttttggcaccttcttgcacagttaaaggacaaattataaacttaccagtgctatttggcagGAAATTTCGCTCCTCAGTCGCTTACGTCATCCAAATATAGTGCAATACTATGGATCTGAGACA
                             |     |    |  |  | |    || | | | | | |      |    |      |||||   | | | | |     | ||   ||||||   || | |||||||||| |  | || ||||   | || |||||||||||||| ||||| |||||||||||||| 
-----------------------------atccatttagctatacaagagtctcttgctctctctgtacaacatacagatagatatgcaccaattatgcatagtcactcaa---accagttgcatcttgcagGAAATTGCATTGCTAAGTCATCTGCGGCATCCAAATATAGTCCAATATTATGGATCTGAGACG

upper sequence: Vv02s0025g03370.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G02520.1 (Glycine max), 3'ss of exon 6
gtaagttttctctagtagatatgctggaaacttgctggttttgaagaaaaaaactggttttttttttttttttttggc-accttcttgcacagttaaaggacaaattataaacttaccagtgctatttggcagGAAATTTCGCTCCTCAGTCGCTTACGTCATCCAAATATAGTGCAATACTATGGATCTGAGACA
                              |    | ||| |  |  |      || |  | | | |   |   |    |      |||||   | | | | |     | ||   ||||||   || | |||||||||| |  | || |||| | | || |||||||||||||| ||||| |||||||||||||| 
------------------------------ccatttagttgtacaagagtctcttgatcctctctgtacatacatactgatagatatgcaccaattatgcatagtcactcaa---accagttgcatcttgcagGAAATTGCATTGCTAAGTCACCTGCGGCATCCAAATATAGTCCAATATTATGGATCTGAGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccttcttgcacagttaaaggacaaattataaacttaccagtgctatttggcagGAAATTTCGCTCCTCAGTCGCTTACGTCATCCAAATATAGTGCAATACTATGGATCTGAGACA
                                aacttac  putative branch site (score: 2)
                      acaaattataaactta  TA-rich tract